Gene : evm_27.TU.AmTr_v1.0_scaffold00089.48 A. trichopoda v1.0
Defline:  (1 of 5) 6.1.1.6 - Lysine--tRNA ligase / Lysyl-tRNA synthetase Genomic Order:  48
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00089.48 Secondary Identifier:  ? PAC:31549606
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRNA-CHARGING-PWY Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00089.48 0.5kb upstream 0.5kb upstream 23312 true AmTr_v1.0_scaffold00089: 1103067-1126378 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00089: 1103067-1103566 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 0.5kb downstream 0.5kb downstream 23312 true AmTr_v1.0_scaffold00089: 1103567-1126878 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00089: 1126379-1126878 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 1.0kb upstream 1.0kb upstream 23812 true AmTr_v1.0_scaffold00089: 1102567-1126378 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00089: 1102567-1103566 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 1.0kb downstream 1.0kb downstream 23812 true AmTr_v1.0_scaffold00089: 1103567-1127378 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00089: 1126379-1127378 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 2.0kb upstream 2.0kb upstream 24812 true AmTr_v1.0_scaffold00089: 1101567-1126378 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00089: 1101567-1103566 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 2.0kb downstream 2.0kb downstream 24812 true AmTr_v1.0_scaffold00089: 1103567-1128378 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00089: 1126379-1128378 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 5.0kb upstream 5.0kb upstream 27812 true AmTr_v1.0_scaffold00089: 1098567-1126378 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00089: 1098567-1103566 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 5.0kb downstream 5.0kb downstream 27812 true AmTr_v1.0_scaffold00089: 1103567-1131378 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00089: 1126379-1131378 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 10.0kb upstream 10.0kb upstream 32812 true AmTr_v1.0_scaffold00089: 1093567-1126378 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00089: 1093567-1103566 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 10.0kb downstream 10.0kb downstream 32812 true AmTr_v1.0_scaffold00089: 1103567-1136378 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00089.48 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00089: 1126379-1136378 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122044302 5273 Angiosperm View MSA
121346599 5274 Embryophyte View MSA
123423817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain