Gene : evm_27.TU.AmTr_v1.0_scaffold00101.107 A. trichopoda v1.0
Defline:  (1 of 21) PF00533 - BRCA1 C Terminus (BRCT) domain Genomic Order:  106
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00101.107 Secondary Identifier:  ? PAC:31558334
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00101.107 0.5kb upstream 0.5kb upstream 10679 true AmTr_v1.0_scaffold00101: 1831927-1842605 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00101: 1831927-1832426 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 0.5kb downstream 0.5kb downstream 10679 true AmTr_v1.0_scaffold00101: 1832427-1843105 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00101: 1842606-1843105 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 1.0kb upstream 1.0kb upstream 11179 true AmTr_v1.0_scaffold00101: 1831427-1842605 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00101: 1831427-1832426 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 1.0kb downstream 1.0kb downstream 11179 true AmTr_v1.0_scaffold00101: 1832427-1843605 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00101: 1842606-1843605 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 2.0kb upstream 2.0kb upstream 12179 true AmTr_v1.0_scaffold00101: 1830427-1842605 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00101: 1830427-1832426 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 2.0kb downstream 2.0kb downstream 12179 true AmTr_v1.0_scaffold00101: 1832427-1844605 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00101: 1842606-1844605 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 5.0kb upstream 5.0kb upstream 15179 true AmTr_v1.0_scaffold00101: 1827427-1842605 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00101: 1827427-1832426 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 5.0kb downstream 5.0kb downstream 15179 true AmTr_v1.0_scaffold00101: 1832427-1847605 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00101: 1842606-1847605 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 10.0kb upstream 10.0kb upstream 20179 true AmTr_v1.0_scaffold00101: 1822427-1842605 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00101: 1822427-1832426 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 10.0kb downstream 10.0kb downstream 20179 true AmTr_v1.0_scaffold00101: 1832427-1852605 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00101.107 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00101: 1842606-1852605 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122048777 5273 Angiosperm View MSA
121349208 5274 Embryophyte View MSA
123381216 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain