Gene : evm_27.TU.AmTr_v1.0_scaffold00097.13 A. trichopoda v1.0
Defline:  (1 of 1) PTHR13789:SF249 - LYCOPENE BETA CYCLASE, CHLOROPLASTIC Genomic Order:  12
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00097.13 Secondary Identifier:  ? PAC:31574995
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda CAROTENOID-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-5943 Amborella trichopoda pathologic  
Atrichopoda PWY-5947 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00097.13 0.5kb upstream 0.5kb upstream 2009 true AmTr_v1.0_scaffold00097: 606081-608089 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00097: 606081-606580 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 0.5kb downstream 0.5kb downstream 2009 true AmTr_v1.0_scaffold00097: 606581-608589 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00097: 608090-608589 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 1.0kb upstream 1.0kb upstream 2509 true AmTr_v1.0_scaffold00097: 605581-608089 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00097: 605581-606580 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 1.0kb downstream 1.0kb downstream 2509 true AmTr_v1.0_scaffold00097: 606581-609089 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00097: 608090-609089 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 2.0kb upstream 2.0kb upstream 3509 true AmTr_v1.0_scaffold00097: 604581-608089 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00097: 604581-606580 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 2.0kb downstream 2.0kb downstream 3509 true AmTr_v1.0_scaffold00097: 606581-610089 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00097: 608090-610089 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 5.0kb upstream 5.0kb upstream 6509 true AmTr_v1.0_scaffold00097: 601581-608089 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00097: 601581-606580 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 5.0kb downstream 5.0kb downstream 6509 true AmTr_v1.0_scaffold00097: 606581-613089 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00097: 608090-613089 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 10.0kb upstream 10.0kb upstream 11509 true AmTr_v1.0_scaffold00097: 596581-608089 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00097: 596581-606580 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 10.0kb downstream 10.0kb downstream 11509 true AmTr_v1.0_scaffold00097: 606581-618089 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00097.13 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00097: 608090-618089 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain