Gene : evm_27.TU.AmTr_v1.0_scaffold00106.25 A. trichopoda v1.0
Defline:  (1 of 4) 6.1.1.4 - Leucine--tRNA ligase / Leucyl-tRNA synthetase Genomic Order:  25
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00106.25 Secondary Identifier:  ? PAC:31550186
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRNA-CHARGING-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00106.25 0.5kb upstream 0.5kb upstream 23103 true AmTr_v1.0_scaffold00106: 418402-441504 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00106: 441005-441504 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 0.5kb downstream 0.5kb downstream 23103 true AmTr_v1.0_scaffold00106: 417902-441004 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00106: 417902-418401 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 1.0kb upstream 1.0kb upstream 23603 true AmTr_v1.0_scaffold00106: 418402-442004 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00106: 441005-442004 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 1.0kb downstream 1.0kb downstream 23603 true AmTr_v1.0_scaffold00106: 417402-441004 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00106: 417402-418401 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 2.0kb upstream 2.0kb upstream 24603 true AmTr_v1.0_scaffold00106: 418402-443004 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00106: 441005-443004 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 2.0kb downstream 2.0kb downstream 24603 true AmTr_v1.0_scaffold00106: 416402-441004 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00106: 416402-418401 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 5.0kb upstream 5.0kb upstream 27603 true AmTr_v1.0_scaffold00106: 418402-446004 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00106: 441005-446004 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 5.0kb downstream 5.0kb downstream 27603 true AmTr_v1.0_scaffold00106: 413402-441004 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00106: 413402-418401 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 10.0kb upstream 10.0kb upstream 32603 true AmTr_v1.0_scaffold00106: 418402-451004 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00106: 441005-451004 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 10.0kb downstream 10.0kb downstream 32603 true AmTr_v1.0_scaffold00106: 408402-441004 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.25 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00106: 408402-418401 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041369 5273 Angiosperm View MSA
121347479 5274 Embryophyte View MSA
123424257 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain