Gene : evm_27.TU.AmTr_v1.0_scaffold00102.59 A. trichopoda v1.0
Defline:  (1 of 1) PTHR33149:SF1 - PHOTOSYSTEM II D2 PROTEIN Genomic Order:  56
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00102.59 Secondary Identifier:  ? PAC:31554029
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PHOTOALL-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-101 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00102.59 0.5kb upstream 0.5kb upstream 1562 true AmTr_v1.0_scaffold00102: 1327992-1329553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00102: 1327992-1328491 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 0.5kb downstream 0.5kb downstream 1562 true AmTr_v1.0_scaffold00102: 1328492-1330053 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00102: 1329554-1330053 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 1.0kb upstream 1.0kb upstream 2062 true AmTr_v1.0_scaffold00102: 1327492-1329553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00102: 1327492-1328491 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 1.0kb downstream 1.0kb downstream 2062 true AmTr_v1.0_scaffold00102: 1328492-1330553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00102: 1329554-1330553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 2.0kb upstream 2.0kb upstream 3062 true AmTr_v1.0_scaffold00102: 1326492-1329553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00102: 1326492-1328491 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 2.0kb downstream 2.0kb downstream 3062 true AmTr_v1.0_scaffold00102: 1328492-1331553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00102: 1329554-1331553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 5.0kb upstream 5.0kb upstream 6062 true AmTr_v1.0_scaffold00102: 1323492-1329553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00102: 1323492-1328491 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 5.0kb downstream 5.0kb downstream 6062 true AmTr_v1.0_scaffold00102: 1328492-1334553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00102: 1329554-1334553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 10.0kb upstream 10.0kb upstream 11062 true AmTr_v1.0_scaffold00102: 1318492-1329553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00102: 1318492-1328491 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 10.0kb downstream 10.0kb downstream 11062 true AmTr_v1.0_scaffold00102: 1328492-1339553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00102.59 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00102: 1329554-1339553 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain