Gene : evm_27.TU.AmTr_v1.0_scaffold00138.6 A. trichopoda v1.0
Defline:  (1 of 2) 6.1.1.1 - Tyrosine--tRNA ligase / Tyrosyl-tRNA synthetase Genomic Order:  6
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00138.6 Secondary Identifier:  ? PAC:31552634
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRNA-CHARGING-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00138.6 0.5kb upstream 0.5kb upstream 1988 true AmTr_v1.0_scaffold00138: 90979-92966 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00138: 92467-92966 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 0.5kb downstream 0.5kb downstream 1988 true AmTr_v1.0_scaffold00138: 90479-92466 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00138: 90479-90978 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 1.0kb upstream 1.0kb upstream 2488 true AmTr_v1.0_scaffold00138: 90979-93466 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00138: 92467-93466 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 1.0kb downstream 1.0kb downstream 2488 true AmTr_v1.0_scaffold00138: 89979-92466 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00138: 89979-90978 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 2.0kb upstream 2.0kb upstream 3488 true AmTr_v1.0_scaffold00138: 90979-94466 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00138: 92467-94466 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 2.0kb downstream 2.0kb downstream 3488 true AmTr_v1.0_scaffold00138: 88979-92466 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00138: 88979-90978 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 5.0kb upstream 5.0kb upstream 6488 true AmTr_v1.0_scaffold00138: 90979-97466 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00138: 92467-97466 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 5.0kb downstream 5.0kb downstream 6488 true AmTr_v1.0_scaffold00138: 85979-92466 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00138: 85979-90978 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 10.0kb upstream 10.0kb upstream 11488 true AmTr_v1.0_scaffold00138: 90979-102466 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00138: 92467-102466 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 10.0kb downstream 10.0kb downstream 11488 true AmTr_v1.0_scaffold00138: 80979-92466 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00138.6 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00138: 80979-90978 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122042111 5273 Angiosperm View MSA
121344516 5274 Embryophyte View MSA
123424944 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain