Gene : evm_27.TU.AmTr_v1.0_scaffold00147.57 A. trichopoda v1.0
Defline:  (1 of 1) 5.3.1.23 - S-methyl-5-thioribose-1-phosphate isomerase / S-methyl-5-thio-D-ribose-1-phosphate aldose-ketose-isomerase Genomic Order:  57
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00147.57 Secondary Identifier:  ? PAC:31557513
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-4361 Amborella trichopoda pathologic  
Atrichopoda PWY-7270 Amborella trichopoda pathologic  
Atrichopoda PWY-7528 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00147.57 0.5kb upstream 0.5kb upstream 16970 true AmTr_v1.0_scaffold00147: 1199340-1216309 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00147: 1215810-1216309 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 0.5kb downstream 0.5kb downstream 16970 true AmTr_v1.0_scaffold00147: 1198840-1215809 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00147: 1198840-1199339 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 1.0kb upstream 1.0kb upstream 17470 true AmTr_v1.0_scaffold00147: 1199340-1216809 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00147: 1215810-1216809 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 1.0kb downstream 1.0kb downstream 17470 true AmTr_v1.0_scaffold00147: 1198340-1215809 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00147: 1198340-1199339 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 2.0kb upstream 2.0kb upstream 18470 true AmTr_v1.0_scaffold00147: 1199340-1217809 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00147: 1215810-1217809 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 2.0kb downstream 2.0kb downstream 18470 true AmTr_v1.0_scaffold00147: 1197340-1215809 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00147: 1197340-1199339 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 5.0kb upstream 5.0kb upstream 21470 true AmTr_v1.0_scaffold00147: 1199340-1220809 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00147: 1215810-1220809 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 5.0kb downstream 5.0kb downstream 21470 true AmTr_v1.0_scaffold00147: 1194340-1215809 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00147: 1194340-1199339 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 10.0kb upstream 10.0kb upstream 26470 true AmTr_v1.0_scaffold00147: 1199340-1225809 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00147: 1215810-1225809 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 10.0kb downstream 10.0kb downstream 26470 true AmTr_v1.0_scaffold00147: 1189340-1215809 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00147.57 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00147: 1189340-1199339 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122043863 5273 Angiosperm View MSA
121310201 5274 Embryophyte View MSA
123428305 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain