Gene : evm_27.TU.AmTr_v1.0_scaffold00133.48 A. trichopoda v1.0
Defline:  (1 of 1) PTHR14969:SF3 - DIHYDROSPHINGOSINE 1-PHOSPHATE PHOSPHATASE LCB3-RELATED Genomic Order:  48
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00133.48 Secondary Identifier:  ? PAC:31564992
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRIGLSYN-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00133.48 0.5kb upstream 0.5kb upstream 2858 true AmTr_v1.0_scaffold00133: 1326045-1328902 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00133: 1328403-1328902 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 0.5kb downstream 0.5kb downstream 2858 true AmTr_v1.0_scaffold00133: 1325545-1328402 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00133: 1325545-1326044 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 1.0kb upstream 1.0kb upstream 3358 true AmTr_v1.0_scaffold00133: 1326045-1329402 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00133: 1328403-1329402 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 1.0kb downstream 1.0kb downstream 3358 true AmTr_v1.0_scaffold00133: 1325045-1328402 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00133: 1325045-1326044 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 2.0kb upstream 2.0kb upstream 4358 true AmTr_v1.0_scaffold00133: 1326045-1330402 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00133: 1328403-1330402 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 2.0kb downstream 2.0kb downstream 4358 true AmTr_v1.0_scaffold00133: 1324045-1328402 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00133: 1324045-1326044 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 5.0kb upstream 5.0kb upstream 7358 true AmTr_v1.0_scaffold00133: 1326045-1333402 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00133: 1328403-1333402 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 5.0kb downstream 5.0kb downstream 7358 true AmTr_v1.0_scaffold00133: 1321045-1328402 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00133: 1321045-1326044 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 10.0kb upstream 10.0kb upstream 12358 true AmTr_v1.0_scaffold00133: 1326045-1338402 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00133: 1328403-1338402 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 10.0kb downstream 10.0kb downstream 12358 true AmTr_v1.0_scaffold00133: 1316045-1328402 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00133.48 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00133: 1316045-1326044 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041787 5273 Angiosperm View MSA
121351488 5274 Embryophyte View MSA
123382186 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain