Gene : evm_27.TU.AmTr_v1.0_scaffold00189.6 A. trichopoda v1.0
Defline:  (1 of 1) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED Genomic Order:  6
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00189.6 Secondary Identifier:  ? PAC:31562156
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda GLYCOGENSYNTH-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-622 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00189.6 0.5kb upstream 0.5kb upstream 84439 true AmTr_v1.0_scaffold00189: 342889-427327 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00189: 342889-343388 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 0.5kb downstream 0.5kb downstream 84439 true AmTr_v1.0_scaffold00189: 343389-427827 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00189: 427328-427827 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 1.0kb upstream 1.0kb upstream 84939 true AmTr_v1.0_scaffold00189: 342389-427327 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00189: 342389-343388 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 1.0kb downstream 1.0kb downstream 84939 true AmTr_v1.0_scaffold00189: 343389-428327 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00189: 427328-428327 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 2.0kb upstream 2.0kb upstream 85939 true AmTr_v1.0_scaffold00189: 341389-427327 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00189: 341389-343388 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 2.0kb downstream 2.0kb downstream 85939 true AmTr_v1.0_scaffold00189: 343389-429327 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00189: 427328-429327 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 5.0kb upstream 5.0kb upstream 88939 true AmTr_v1.0_scaffold00189: 338389-427327 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00189: 338389-343388 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 5.0kb downstream 5.0kb downstream 88939 true AmTr_v1.0_scaffold00189: 343389-432327 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00189: 427328-432327 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 10.0kb upstream 10.0kb upstream 93939 true AmTr_v1.0_scaffold00189: 333389-427327 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00189: 333389-343388 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 10.0kb downstream 10.0kb downstream 93939 true AmTr_v1.0_scaffold00189: 343389-437327 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00189.6 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00189: 427328-437327 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122042885 5273 Angiosperm View MSA
121344527 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain