Gene : evm_27.TU.AmTr_v1.0_scaffold00606.2 A. trichopoda v1.0
Defline:  (1 of 8) 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Genomic Order:  2
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00606.2 Secondary Identifier:  ? PAC:31554446
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda CALVIN-PWY Amborella trichopoda pathologic  
Atrichopoda PHOTOALL-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-5723 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00606.2 0.5kb upstream 0.5kb upstream 1943 true AmTr_v1.0_scaffold00606: 1372-3314 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00606: 1372-1871 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 0.5kb downstream 0.5kb downstream 1943 true AmTr_v1.0_scaffold00606: 1872-3814 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00606: 3315-3814 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 1.0kb upstream 1.0kb upstream 2443 true AmTr_v1.0_scaffold00606: 872-3314 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00606: 872-1871 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 1.0kb downstream 1.0kb downstream 2443 true AmTr_v1.0_scaffold00606: 1872-4314 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00606: 3315-4314 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 2.0kb upstream 2.0kb upstream 3314 true AmTr_v1.0_scaffold00606: 1-3314 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 2.0kb upstream 2.0kb upstream 1871 false AmTr_v1.0_scaffold00606: 1-1871 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 2.0kb downstream 2.0kb downstream 3443 true AmTr_v1.0_scaffold00606: 1872-5314 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00606: 3315-5314 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 5.0kb upstream 5.0kb upstream 3314 true AmTr_v1.0_scaffold00606: 1-3314 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 5.0kb upstream 5.0kb upstream 1871 false AmTr_v1.0_scaffold00606: 1-1871 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 5.0kb downstream 5.0kb downstream 6443 true AmTr_v1.0_scaffold00606: 1872-8314 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00606: 3315-8314 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 10.0kb upstream 10.0kb upstream 3314 true AmTr_v1.0_scaffold00606: 1-3314 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 10.0kb upstream 10.0kb upstream 1871 false AmTr_v1.0_scaffold00606: 1-1871 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 10.0kb downstream 10.0kb downstream 11443 true AmTr_v1.0_scaffold00606: 1872-13314 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00606.2 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00606: 3315-13314 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122051023 5273 Angiosperm View MSA
121312251 5274 Embryophyte View MSA
123428195 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain