Gene : evm_27.TU.AmTr_v1.0_scaffold00566.1 A. trichopoda v1.0
Defline:  (1 of 4) 2.5.1.29 - Geranylgeranyl diphosphate synthase / Geranylgeranyl-PP synthetase Genomic Order:  1
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00566.1 Secondary Identifier:  ? PAC:31549386
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-5120 Amborella trichopoda pathologic  
Atrichopoda PWY-5910 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00566.1 0.5kb upstream 0.5kb upstream 1610 true AmTr_v1.0_scaffold00566: 4067-5676 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00566: 5177-5676 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 0.5kb downstream 0.5kb downstream 1610 true AmTr_v1.0_scaffold00566: 3567-5176 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00566: 3567-4066 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 1.0kb upstream 1.0kb upstream 2110 true AmTr_v1.0_scaffold00566: 4067-6176 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00566: 5177-6176 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 1.0kb downstream 1.0kb downstream 2110 true AmTr_v1.0_scaffold00566: 3067-5176 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00566: 3067-4066 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 2.0kb upstream 2.0kb upstream 3110 true AmTr_v1.0_scaffold00566: 4067-7176 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00566: 5177-7176 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 2.0kb downstream 2.0kb downstream 3110 true AmTr_v1.0_scaffold00566: 2067-5176 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00566: 2067-4066 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 5.0kb upstream 5.0kb upstream 6110 true AmTr_v1.0_scaffold00566: 4067-10176 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00566: 5177-10176 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 5.0kb downstream 5.0kb downstream 5176 true AmTr_v1.0_scaffold00566: 1-5176 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 5.0kb downstream 5.0kb downstream 4066 false AmTr_v1.0_scaffold00566: 1-4066 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 10.0kb upstream 10.0kb upstream 11110 true AmTr_v1.0_scaffold00566: 4067-15176 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00566: 5177-15176 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 10.0kb downstream 10.0kb downstream 5176 true AmTr_v1.0_scaffold00566: 1-5176 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00566.1 10.0kb downstream 10.0kb downstream 4066 false AmTr_v1.0_scaffold00566: 1-4066 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122051071 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain