Gene : evm_27.TU.AmTr_v1.0_scaffold00334.4 A. trichopoda v1.0
Defline:  (1 of 8) 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Genomic Order:  4
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00334.4 Secondary Identifier:  ? PAC:31549302
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda CALVIN-PWY Amborella trichopoda pathologic  
Atrichopoda PHOTOALL-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-5723 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00334.4 0.5kb upstream 0.5kb upstream 1928 true AmTr_v1.0_scaffold00334: 16442-18369 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00334: 17870-18369 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 0.5kb downstream 0.5kb downstream 1928 true AmTr_v1.0_scaffold00334: 15942-17869 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00334: 15942-16441 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 1.0kb upstream 1.0kb upstream 2428 true AmTr_v1.0_scaffold00334: 16442-18869 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00334: 17870-18869 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 1.0kb downstream 1.0kb downstream 2428 true AmTr_v1.0_scaffold00334: 15442-17869 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00334: 15442-16441 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 2.0kb upstream 2.0kb upstream 3428 true AmTr_v1.0_scaffold00334: 16442-19869 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00334: 17870-19869 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 2.0kb downstream 2.0kb downstream 3428 true AmTr_v1.0_scaffold00334: 14442-17869 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00334: 14442-16441 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 5.0kb upstream 5.0kb upstream 6428 true AmTr_v1.0_scaffold00334: 16442-22869 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00334: 17870-22869 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 5.0kb downstream 5.0kb downstream 6428 true AmTr_v1.0_scaffold00334: 11442-17869 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00334: 11442-16441 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 10.0kb upstream 10.0kb upstream 11428 true AmTr_v1.0_scaffold00334: 16442-27869 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00334: 17870-27869 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 10.0kb downstream 10.0kb downstream 11428 true AmTr_v1.0_scaffold00334: 6442-17869 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00334.4 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00334: 6442-16441 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122051023 5273 Angiosperm View MSA
121312251 5274 Embryophyte View MSA
123428195 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain