Gene : evm_27.TU.AmTr_v1.0_scaffold00162.24 A. trichopoda v1.0
Defline:  (1 of 1) PTHR11739:SF4 - CITRATE SYNTHASE, PEROXISOMAL Genomic Order:  23
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00162.24 Secondary Identifier:  ? PAC:31572387
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda GLYOXYLATE-BYPASS Amborella trichopoda pathologic  
Atrichopoda PWY-5464 Amborella trichopoda pathologic  
Atrichopoda PWY-561 Amborella trichopoda pathologic  
Atrichopoda PWY-5690 Amborella trichopoda pathologic  
Atrichopoda PWY-6549 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00162.24 0.5kb upstream 0.5kb upstream 11784 true AmTr_v1.0_scaffold00162: 498193-509976 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00162: 498193-498692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 0.5kb downstream 0.5kb downstream 11784 true AmTr_v1.0_scaffold00162: 498693-510476 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00162: 509977-510476 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 1.0kb upstream 1.0kb upstream 12284 true AmTr_v1.0_scaffold00162: 497693-509976 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00162: 497693-498692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 1.0kb downstream 1.0kb downstream 12284 true AmTr_v1.0_scaffold00162: 498693-510976 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00162: 509977-510976 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 2.0kb upstream 2.0kb upstream 13284 true AmTr_v1.0_scaffold00162: 496693-509976 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00162: 496693-498692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 2.0kb downstream 2.0kb downstream 13284 true AmTr_v1.0_scaffold00162: 498693-511976 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00162: 509977-511976 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 5.0kb upstream 5.0kb upstream 16284 true AmTr_v1.0_scaffold00162: 493693-509976 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00162: 493693-498692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 5.0kb downstream 5.0kb downstream 16284 true AmTr_v1.0_scaffold00162: 498693-514976 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00162: 509977-514976 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 10.0kb upstream 10.0kb upstream 21284 true AmTr_v1.0_scaffold00162: 488693-509976 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00162: 488693-498692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 10.0kb downstream 10.0kb downstream 21284 true AmTr_v1.0_scaffold00162: 498693-519976 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00162.24 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00162: 509977-519976 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain