Gene : evm_27.TU.AmTr_v1.0_scaffold00157.25 A. trichopoda v1.0
Defline:  (1 of 3) PF13975 - gag-polyprotein putative aspartyl protease (gag-asp_proteas) Genomic Order:  25
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00157.25 Secondary Identifier:  ? PAC:31567374
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00157.25 0.5kb upstream 0.5kb upstream 1177 true AmTr_v1.0_scaffold00157: 581878-583054 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00157: 581878-582377 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 0.5kb downstream 0.5kb downstream 1177 true AmTr_v1.0_scaffold00157: 582378-583554 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00157: 583055-583554 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 1.0kb upstream 1.0kb upstream 1677 true AmTr_v1.0_scaffold00157: 581378-583054 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00157: 581378-582377 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 1.0kb downstream 1.0kb downstream 1677 true AmTr_v1.0_scaffold00157: 582378-584054 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00157: 583055-584054 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 2.0kb upstream 2.0kb upstream 2677 true AmTr_v1.0_scaffold00157: 580378-583054 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00157: 580378-582377 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 2.0kb downstream 2.0kb downstream 2677 true AmTr_v1.0_scaffold00157: 582378-585054 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00157: 583055-585054 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 5.0kb upstream 5.0kb upstream 5677 true AmTr_v1.0_scaffold00157: 577378-583054 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00157: 577378-582377 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 5.0kb downstream 5.0kb downstream 5677 true AmTr_v1.0_scaffold00157: 582378-588054 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00157: 583055-588054 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 10.0kb upstream 10.0kb upstream 10677 true AmTr_v1.0_scaffold00157: 572378-583054 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00157: 572378-582377 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 10.0kb downstream 10.0kb downstream 10677 true AmTr_v1.0_scaffold00157: 582378-593054 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00157.25 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00157: 583055-593054 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121781987 5273 Angiosperm View MSA
121053534 5274 Embryophyte View MSA
123093551 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain