Gene : evm_27.TU.AmTr_v1.0_scaffold00178.11 A. trichopoda v1.0
Defline:  (1 of 1) PF04827 - Plant transposon protein (Plant_tran) Genomic Order:  11
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00178.11 Secondary Identifier:  ? PAC:31567411
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00178.11 0.5kb upstream 0.5kb upstream 1791 true AmTr_v1.0_scaffold00178: 577448-579238 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00178: 577448-577947 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 0.5kb downstream 0.5kb downstream 1791 true AmTr_v1.0_scaffold00178: 577948-579738 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00178: 579239-579738 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 1.0kb upstream 1.0kb upstream 2291 true AmTr_v1.0_scaffold00178: 576948-579238 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00178: 576948-577947 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 1.0kb downstream 1.0kb downstream 2291 true AmTr_v1.0_scaffold00178: 577948-580238 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00178: 579239-580238 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 2.0kb upstream 2.0kb upstream 3291 true AmTr_v1.0_scaffold00178: 575948-579238 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00178: 575948-577947 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 2.0kb downstream 2.0kb downstream 3291 true AmTr_v1.0_scaffold00178: 577948-581238 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00178: 579239-581238 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 5.0kb upstream 5.0kb upstream 6291 true AmTr_v1.0_scaffold00178: 572948-579238 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00178: 572948-577947 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 5.0kb downstream 5.0kb downstream 6291 true AmTr_v1.0_scaffold00178: 577948-584238 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00178: 579239-584238 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 10.0kb upstream 10.0kb upstream 11291 true AmTr_v1.0_scaffold00178: 567948-579238 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00178: 567948-577947 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 10.0kb downstream 10.0kb downstream 11291 true AmTr_v1.0_scaffold00178: 577948-589238 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00178.11 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00178: 579239-589238 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122043716 5273 Angiosperm View MSA
121348117 5274 Embryophyte View MSA
123380731 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain