Gene : evm_27.TU.AmTr_v1.0_scaffold00177.24 A. trichopoda v1.0
Defline:  (1 of 2) PTHR10836:SF59 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPC1, CYTOSOLIC Genomic Order:  24
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00177.24 Secondary Identifier:  ? PAC:31554965
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda ANAEROFRUCAT-PWY Amborella trichopoda pathologic  
Atrichopoda ANAGLYCOLYSIS-PWY Amborella trichopoda pathologic  
Atrichopoda GLUCONEO-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-1042 Amborella trichopoda pathologic  
Atrichopoda PWY-5464 Amborella trichopoda pathologic  
Atrichopoda SUCSYN-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00177.24 0.5kb upstream 0.5kb upstream 3628 true AmTr_v1.0_scaffold00177: 428108-431735 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00177: 431236-431735 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 0.5kb downstream 0.5kb downstream 3628 true AmTr_v1.0_scaffold00177: 427608-431235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00177: 427608-428107 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 1.0kb upstream 1.0kb upstream 4128 true AmTr_v1.0_scaffold00177: 428108-432235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00177: 431236-432235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 1.0kb downstream 1.0kb downstream 4128 true AmTr_v1.0_scaffold00177: 427108-431235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00177: 427108-428107 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 2.0kb upstream 2.0kb upstream 5128 true AmTr_v1.0_scaffold00177: 428108-433235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00177: 431236-433235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 2.0kb downstream 2.0kb downstream 5128 true AmTr_v1.0_scaffold00177: 426108-431235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00177: 426108-428107 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 5.0kb upstream 5.0kb upstream 8128 true AmTr_v1.0_scaffold00177: 428108-436235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00177: 431236-436235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 5.0kb downstream 5.0kb downstream 8128 true AmTr_v1.0_scaffold00177: 423108-431235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00177: 423108-428107 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 10.0kb upstream 10.0kb upstream 13128 true AmTr_v1.0_scaffold00177: 428108-441235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00177: 431236-441235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 10.0kb downstream 10.0kb downstream 13128 true AmTr_v1.0_scaffold00177: 418108-431235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.24 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00177: 418108-428107 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain