Gene : evm_27.TU.AmTr_v1.0_scaffold00177.21 A. trichopoda v1.0
Defline:  (1 of 2) PTHR10836:SF59 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPC1, CYTOSOLIC Genomic Order:  21
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00177.21 Secondary Identifier:  ? PAC:31554944
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda ANAEROFRUCAT-PWY Amborella trichopoda pathologic  
Atrichopoda ANAGLYCOLYSIS-PWY Amborella trichopoda pathologic  
Atrichopoda GLUCONEO-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-1042 Amborella trichopoda pathologic  
Atrichopoda PWY-5464 Amborella trichopoda pathologic  
Atrichopoda SUCSYN-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00177.21 0.5kb upstream 0.5kb upstream 3010 true AmTr_v1.0_scaffold00177: 413968-416977 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00177: 413968-414467 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 0.5kb downstream 0.5kb downstream 3010 true AmTr_v1.0_scaffold00177: 414468-417477 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00177: 416978-417477 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 1.0kb upstream 1.0kb upstream 3510 true AmTr_v1.0_scaffold00177: 413468-416977 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00177: 413468-414467 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 1.0kb downstream 1.0kb downstream 3510 true AmTr_v1.0_scaffold00177: 414468-417977 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00177: 416978-417977 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 2.0kb upstream 2.0kb upstream 4510 true AmTr_v1.0_scaffold00177: 412468-416977 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00177: 412468-414467 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 2.0kb downstream 2.0kb downstream 4510 true AmTr_v1.0_scaffold00177: 414468-418977 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00177: 416978-418977 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 5.0kb upstream 5.0kb upstream 7510 true AmTr_v1.0_scaffold00177: 409468-416977 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00177: 409468-414467 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 5.0kb downstream 5.0kb downstream 7510 true AmTr_v1.0_scaffold00177: 414468-421977 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00177: 416978-421977 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 10.0kb upstream 10.0kb upstream 12510 true AmTr_v1.0_scaffold00177: 404468-416977 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00177: 404468-414467 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 10.0kb downstream 10.0kb downstream 12510 true AmTr_v1.0_scaffold00177: 414468-426977 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00177.21 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00177: 416978-426977 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain