Gene : evm_27.TU.AmTr_v1.0_scaffold00175.20 A. trichopoda v1.0
Defline:  (1 of 1) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase Genomic Order:  19
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00175.20 Secondary Identifier:  ? PAC:31572489
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda ARO-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-6163 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00175.20 0.5kb upstream 0.5kb upstream 6978 true AmTr_v1.0_scaffold00175: 422818-429795 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00175: 422818-423317 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 0.5kb downstream 0.5kb downstream 6978 true AmTr_v1.0_scaffold00175: 423318-430295 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00175: 429796-430295 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 1.0kb upstream 1.0kb upstream 7478 true AmTr_v1.0_scaffold00175: 422318-429795 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00175: 422318-423317 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 1.0kb downstream 1.0kb downstream 7478 true AmTr_v1.0_scaffold00175: 423318-430795 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00175: 429796-430795 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 2.0kb upstream 2.0kb upstream 8478 true AmTr_v1.0_scaffold00175: 421318-429795 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00175: 421318-423317 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 2.0kb downstream 2.0kb downstream 8478 true AmTr_v1.0_scaffold00175: 423318-431795 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00175: 429796-431795 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 5.0kb upstream 5.0kb upstream 11478 true AmTr_v1.0_scaffold00175: 418318-429795 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00175: 418318-423317 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 5.0kb downstream 5.0kb downstream 11478 true AmTr_v1.0_scaffold00175: 423318-434795 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00175: 429796-434795 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 10.0kb upstream 10.0kb upstream 16478 true AmTr_v1.0_scaffold00175: 413318-429795 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00175: 413318-423317 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 10.0kb downstream 10.0kb downstream 16478 true AmTr_v1.0_scaffold00175: 423318-439795 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00175.20 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00175: 429796-439795 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041230 5273 Angiosperm View MSA
121346403 5274 Embryophyte View MSA
123428194 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain