Gene : Brast03G230300 B. stacei v1.1
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  2303
Name:  ? Brast03G230300 Secondary Identifier:  ? PAC:32855662
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstacei CAROTENOID-PWY Brachypodium stacei pathologic  
Bstacei PWY-5943 Brachypodium stacei pathologic  
Bstacei PWY-5947 Brachypodium stacei pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brast03G230300 0.5kb upstream 0.5kb upstream 8894 true Chr03: 20393064-20401957 Brachypodium stacei
Brast03G230300 0.5kb upstream 0.5kb upstream 500 false Chr03: 20393064-20393563 Brachypodium stacei
Brast03G230300 0.5kb downstream 0.5kb downstream 8894 true Chr03: 20393564-20402457 Brachypodium stacei
Brast03G230300 0.5kb downstream 0.5kb downstream 500 false Chr03: 20401958-20402457 Brachypodium stacei
Brast03G230300 1.0kb upstream 1.0kb upstream 9394 true Chr03: 20392564-20401957 Brachypodium stacei
Brast03G230300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 20392564-20393563 Brachypodium stacei
Brast03G230300 1.0kb downstream 1.0kb downstream 9394 true Chr03: 20393564-20402957 Brachypodium stacei
Brast03G230300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 20401958-20402957 Brachypodium stacei
Brast03G230300 2.0kb upstream 2.0kb upstream 10394 true Chr03: 20391564-20401957 Brachypodium stacei
Brast03G230300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 20391564-20393563 Brachypodium stacei
Brast03G230300 2.0kb downstream 2.0kb downstream 10394 true Chr03: 20393564-20403957 Brachypodium stacei
Brast03G230300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 20401958-20403957 Brachypodium stacei
Brast03G230300 5.0kb upstream 5.0kb upstream 13394 true Chr03: 20388564-20401957 Brachypodium stacei
Brast03G230300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 20388564-20393563 Brachypodium stacei
Brast03G230300 5.0kb downstream 5.0kb downstream 13394 true Chr03: 20393564-20406957 Brachypodium stacei
Brast03G230300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 20401958-20406957 Brachypodium stacei
Brast03G230300 10.0kb upstream 10.0kb upstream 18394 true Chr03: 20383564-20401957 Brachypodium stacei
Brast03G230300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 20383564-20393563 Brachypodium stacei
Brast03G230300 10.0kb downstream 10.0kb downstream 18394 true Chr03: 20393564-20411957 Brachypodium stacei
Brast03G230300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 20401958-20411957 Brachypodium stacei

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570588 5269 Grass View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain