Gene : Vocar.0012s0271 V. carteri v2.1
Defline:  (1 of 74) PF05548 - Gametolysin peptidase M11 (Peptidase_M11) Description:  VMP42 belongs to the large VMP-family of Volvox metalloproteinases; the binding site of the catalytic metal ion in VMPs is QExxHxxGxxH not HExxHxxGxxH, therefore VMPs prefer copper for activity rather than zinc; VMPs are extracellular matrix glycoproteins
Genomic Order:  271 Name:  ? Vocar.0012s0271
Secondary Identifier:  ? PAC:32895087
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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Vocar.0012s0271 0.5kb upstream 0.5kb upstream 7656 true scaffold_12: 2598327-2605982 Volvox carteri
Vocar.0012s0271 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 2605483-2605982 Volvox carteri
Vocar.0012s0271 0.5kb downstream 0.5kb downstream 7656 true scaffold_12: 2597827-2605482 Volvox carteri
Vocar.0012s0271 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 2597827-2598326 Volvox carteri
Vocar.0012s0271 1.0kb upstream 1.0kb upstream 8156 true scaffold_12: 2598327-2606482 Volvox carteri
Vocar.0012s0271 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 2605483-2606482 Volvox carteri
Vocar.0012s0271 1.0kb downstream 1.0kb downstream 8156 true scaffold_12: 2597327-2605482 Volvox carteri
Vocar.0012s0271 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 2597327-2598326 Volvox carteri
Vocar.0012s0271 2.0kb upstream 2.0kb upstream 9156 true scaffold_12: 2598327-2607482 Volvox carteri
Vocar.0012s0271 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 2605483-2607482 Volvox carteri
Vocar.0012s0271 2.0kb downstream 2.0kb downstream 9156 true scaffold_12: 2596327-2605482 Volvox carteri
Vocar.0012s0271 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 2596327-2598326 Volvox carteri
Vocar.0012s0271 5.0kb upstream 5.0kb upstream 12156 true scaffold_12: 2598327-2610482 Volvox carteri
Vocar.0012s0271 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 2605483-2610482 Volvox carteri
Vocar.0012s0271 5.0kb downstream 5.0kb downstream 12156 true scaffold_12: 2593327-2605482 Volvox carteri
Vocar.0012s0271 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 2593327-2598326 Volvox carteri
Vocar.0012s0271 10.0kb upstream 10.0kb upstream 17156 true scaffold_12: 2598327-2615482 Volvox carteri
Vocar.0012s0271 10.0kb upstream 10.0kb upstream 10000 false scaffold_12: 2605483-2615482 Volvox carteri
Vocar.0012s0271 10.0kb downstream 10.0kb downstream 17156 true scaffold_12: 2588327-2605482 Volvox carteri
Vocar.0012s0271 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 2588327-2598326 Volvox carteri

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124094274 5260 Chlorophyte View MSA
123411159 5275 Viridiplantae View MSA

0 Rna Seq Expressions

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