Protein Domain : IPR008051

Type:  Family Name:  Voltage gated sodium channel, alpha-1 subunit
Description:  Voltage-dependent sodium channels are transmembrane (TM) proteins responsible for the depolarising phase of the action potential in mostelectrically excitable cells []. They may exist in 3 states []: theresting state, where the channel is closed; the activated state, where the channel is open; and the inactivated state, where the channel is closedand refractory to opening. Several different structurally and functionally distinct isoforms are found in mammals, coded for by a multigene family, these being responsible for the different types of sodium ion currentsfound in excitable tissues. The structure of sodium channels is based on 4 internal repeats of a 6-helix bundle [] (in which 5 of the membrane-spanning segments are hydrophobic andthe other is positively charged), forming a 24-helical bundle. The charged segments are believed to be localised within clusters formed by their 5 hydrophobic neighbours: it is postulated that the charged domain may be the voltage sensor region, possibly moving outward on depolarisation, causing aconformational change. This model [] contrastswith another [], in which the TM segments are juxtaposedoctagonally. The basic structural motif (the 6-helix bundle) is also found in potassium and calcium channel alpha subunits.The SCN1A gene encodes the NaB1 channel and is particularly expressed in the brain, but is also found in a variety of other tissues, ranging from theretina to the olfactory bulb. Epilepsy, a disorder of neuronal hyperexcitability, has been associated with altered kinetics of SCN1A, aswell as delayed inactivation of SCN2A [].This entry represents the alpha 1 subunits of the voltage-gated Na+ channel superfamily. For entries containing other members of this superfamily see , , . Short Name:  Na_channel_a1su

0 Child Features

2 Contains

DB identifier Type Name
IPR005821 Domain Ion transport domain
IPR010526 Domain Sodium ion transport-associated

1 Cross References

Identifier
PR01664

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0005248 IPR008051
GO:0006814 IPR008051
GO:0001518 IPR008051

3 Ontology Annotations

GO Term Gene Name
GO:0005248 IPR008051
GO:0006814 IPR008051
GO:0001518 IPR008051

1 Parent Features

DB identifier Type Name
IPR001696 Family Voltage gated sodium channel, alpha subunit

0 Proteins

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            1323284
            6209577
            1317577
            11756608