Gene : Traes_1BL_6C7C2F32A T. aestivum v2.2
Defline:  (1 of 3) PF00575//PF03876 - S1 RNA binding domain (S1) // SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 (SHS2_Rpb7-N) Genomic Order:  2
Name:  ? Traes_1BL_6C7C2F32A Secondary Identifier:  ? PAC:31737587
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Traes_1BL_6C7C2F32A 0.5kb upstream 0.5kb upstream 3341 true ta_iwgsc_1bl_v1_3890945: 9560-12900 Triticum aestivum
Traes_1BL_6C7C2F32A 0.5kb upstream 0.5kb upstream 500 false ta_iwgsc_1bl_v1_3890945: 9560-10059 Triticum aestivum
Traes_1BL_6C7C2F32A 0.5kb downstream 0.5kb downstream 3341 true ta_iwgsc_1bl_v1_3890945: 10060-13400 Triticum aestivum
Traes_1BL_6C7C2F32A 0.5kb downstream 0.5kb downstream 500 false ta_iwgsc_1bl_v1_3890945: 12901-13400 Triticum aestivum
Traes_1BL_6C7C2F32A 1.0kb upstream 1.0kb upstream 3841 true ta_iwgsc_1bl_v1_3890945: 9060-12900 Triticum aestivum
Traes_1BL_6C7C2F32A 1.0kb upstream 1.0kb upstream 1000 false ta_iwgsc_1bl_v1_3890945: 9060-10059 Triticum aestivum
Traes_1BL_6C7C2F32A 1.0kb downstream 1.0kb downstream 3841 true ta_iwgsc_1bl_v1_3890945: 10060-13900 Triticum aestivum
Traes_1BL_6C7C2F32A 1.0kb downstream 1.0kb downstream 1000 false ta_iwgsc_1bl_v1_3890945: 12901-13900 Triticum aestivum
Traes_1BL_6C7C2F32A 2.0kb upstream 2.0kb upstream 4841 true ta_iwgsc_1bl_v1_3890945: 8060-12900 Triticum aestivum
Traes_1BL_6C7C2F32A 2.0kb upstream 2.0kb upstream 2000 false ta_iwgsc_1bl_v1_3890945: 8060-10059 Triticum aestivum
Traes_1BL_6C7C2F32A 2.0kb downstream 2.0kb downstream 4841 true ta_iwgsc_1bl_v1_3890945: 10060-14900 Triticum aestivum
Traes_1BL_6C7C2F32A 2.0kb downstream 2.0kb downstream 2000 false ta_iwgsc_1bl_v1_3890945: 12901-14900 Triticum aestivum
Traes_1BL_6C7C2F32A 5.0kb upstream 5.0kb upstream 7841 true ta_iwgsc_1bl_v1_3890945: 5060-12900 Triticum aestivum
Traes_1BL_6C7C2F32A 5.0kb upstream 5.0kb upstream 5000 false ta_iwgsc_1bl_v1_3890945: 5060-10059 Triticum aestivum
Traes_1BL_6C7C2F32A 5.0kb downstream 5.0kb downstream 7841 true ta_iwgsc_1bl_v1_3890945: 10060-17900 Triticum aestivum
Traes_1BL_6C7C2F32A 5.0kb downstream 5.0kb downstream 5000 false ta_iwgsc_1bl_v1_3890945: 12901-17900 Triticum aestivum
Traes_1BL_6C7C2F32A 10.0kb upstream 10.0kb upstream 12841 true ta_iwgsc_1bl_v1_3890945: 60-12900 Triticum aestivum
Traes_1BL_6C7C2F32A 10.0kb upstream 10.0kb upstream 10000 false ta_iwgsc_1bl_v1_3890945: 60-10059 Triticum aestivum
Traes_1BL_6C7C2F32A 10.0kb downstream 10.0kb downstream 12841 true ta_iwgsc_1bl_v1_3890945: 10060-22900 Triticum aestivum
Traes_1BL_6C7C2F32A 10.0kb downstream 10.0kb downstream 10000 false ta_iwgsc_1bl_v1_3890945: 12901-22900 Triticum aestivum

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570510 5269 Grass View MSA
122045109 5273 Angiosperm View MSA
121343808 5274 Embryophyte View MSA
123424516 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain