Gene : Traes_2DS_3CC5F156F T. aestivum v2.2
Defline:  (1 of 17) PF12338 - Ribulose-1,5-bisphosphate carboxylase small subunit (RbcS) Genomic Order:  1
Name:  ? Traes_2DS_3CC5F156F Secondary Identifier:  ? PAC:31881954
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Taestivum CALVIN-PWY Triticum aestivum pathologic  
Taestivum PHOTOALL-PWY Triticum aestivum pathologic  
Taestivum PWY-5723 Triticum aestivum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Traes_2DS_3CC5F156F 0.5kb upstream 0.5kb upstream 8386 true ta_iwgsc_2ds_v1_5388661: 5778-14163 Triticum aestivum
Traes_2DS_3CC5F156F 0.5kb upstream 0.5kb upstream 500 false ta_iwgsc_2ds_v1_5388661: 13664-14163 Triticum aestivum
Traes_2DS_3CC5F156F 0.5kb downstream 0.5kb downstream 8386 true ta_iwgsc_2ds_v1_5388661: 5278-13663 Triticum aestivum
Traes_2DS_3CC5F156F 0.5kb downstream 0.5kb downstream 500 false ta_iwgsc_2ds_v1_5388661: 5278-5777 Triticum aestivum
Traes_2DS_3CC5F156F 1.0kb upstream 1.0kb upstream 8886 true ta_iwgsc_2ds_v1_5388661: 5778-14663 Triticum aestivum
Traes_2DS_3CC5F156F 1.0kb upstream 1.0kb upstream 1000 false ta_iwgsc_2ds_v1_5388661: 13664-14663 Triticum aestivum
Traes_2DS_3CC5F156F 1.0kb downstream 1.0kb downstream 8886 true ta_iwgsc_2ds_v1_5388661: 4778-13663 Triticum aestivum
Traes_2DS_3CC5F156F 1.0kb downstream 1.0kb downstream 1000 false ta_iwgsc_2ds_v1_5388661: 4778-5777 Triticum aestivum
Traes_2DS_3CC5F156F 2.0kb upstream 2.0kb upstream 9886 true ta_iwgsc_2ds_v1_5388661: 5778-15663 Triticum aestivum
Traes_2DS_3CC5F156F 2.0kb upstream 2.0kb upstream 2000 false ta_iwgsc_2ds_v1_5388661: 13664-15663 Triticum aestivum
Traes_2DS_3CC5F156F 2.0kb downstream 2.0kb downstream 9886 true ta_iwgsc_2ds_v1_5388661: 3778-13663 Triticum aestivum
Traes_2DS_3CC5F156F 2.0kb downstream 2.0kb downstream 2000 false ta_iwgsc_2ds_v1_5388661: 3778-5777 Triticum aestivum
Traes_2DS_3CC5F156F 5.0kb upstream 5.0kb upstream 10686 true ta_iwgsc_2ds_v1_5388661: 5778-16463 Triticum aestivum
Traes_2DS_3CC5F156F 5.0kb upstream 5.0kb upstream 2800 false ta_iwgsc_2ds_v1_5388661: 13664-16463 Triticum aestivum
Traes_2DS_3CC5F156F 5.0kb downstream 5.0kb downstream 12886 true ta_iwgsc_2ds_v1_5388661: 778-13663 Triticum aestivum
Traes_2DS_3CC5F156F 5.0kb downstream 5.0kb downstream 5000 false ta_iwgsc_2ds_v1_5388661: 778-5777 Triticum aestivum
Traes_2DS_3CC5F156F 10.0kb upstream 10.0kb upstream 10686 true ta_iwgsc_2ds_v1_5388661: 5778-16463 Triticum aestivum
Traes_2DS_3CC5F156F 10.0kb upstream 10.0kb upstream 2800 false ta_iwgsc_2ds_v1_5388661: 13664-16463 Triticum aestivum
Traes_2DS_3CC5F156F 10.0kb downstream 10.0kb downstream 13663 true ta_iwgsc_2ds_v1_5388661: 1-13663 Triticum aestivum
Traes_2DS_3CC5F156F 10.0kb downstream 10.0kb downstream 5777 false ta_iwgsc_2ds_v1_5388661: 1-5777 Triticum aestivum

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124590513 5269 Grass View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain