Gene : Traes_3B_BE6D0DAE01 T. aestivum v2.2
Defline:  (1 of 2) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  1
Name:  ? Traes_3B_BE6D0DAE01 Secondary Identifier:  ? PAC:32006939
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Taestivum CAROTENOID-PWY Triticum aestivum pathologic  
Taestivum PWY-5943 Triticum aestivum pathologic  
Taestivum PWY-5947 Triticum aestivum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Traes_3B_BE6D0DAE01 0.5kb upstream 0.5kb upstream 1947 true ta_iwgsc_3b_v1_4086848: 1366-3312 Triticum aestivum
Traes_3B_BE6D0DAE01 0.5kb upstream 0.5kb upstream 1 false ta_iwgsc_3b_v1_4086848: 3312-3312 Triticum aestivum
Traes_3B_BE6D0DAE01 0.5kb downstream 0.5kb downstream 2446 true ta_iwgsc_3b_v1_4086848: 866-3311 Triticum aestivum
Traes_3B_BE6D0DAE01 0.5kb downstream 0.5kb downstream 500 false ta_iwgsc_3b_v1_4086848: 866-1365 Triticum aestivum
Traes_3B_BE6D0DAE01 1.0kb upstream 1.0kb upstream 1947 true ta_iwgsc_3b_v1_4086848: 1366-3312 Triticum aestivum
Traes_3B_BE6D0DAE01 1.0kb upstream 1.0kb upstream 1 false ta_iwgsc_3b_v1_4086848: 3312-3312 Triticum aestivum
Traes_3B_BE6D0DAE01 1.0kb downstream 1.0kb downstream 2946 true ta_iwgsc_3b_v1_4086848: 366-3311 Triticum aestivum
Traes_3B_BE6D0DAE01 1.0kb downstream 1.0kb downstream 1000 false ta_iwgsc_3b_v1_4086848: 366-1365 Triticum aestivum
Traes_3B_BE6D0DAE01 2.0kb upstream 2.0kb upstream 1947 true ta_iwgsc_3b_v1_4086848: 1366-3312 Triticum aestivum
Traes_3B_BE6D0DAE01 2.0kb upstream 2.0kb upstream 1 false ta_iwgsc_3b_v1_4086848: 3312-3312 Triticum aestivum
Traes_3B_BE6D0DAE01 2.0kb downstream 2.0kb downstream 3311 true ta_iwgsc_3b_v1_4086848: 1-3311 Triticum aestivum
Traes_3B_BE6D0DAE01 2.0kb downstream 2.0kb downstream 1365 false ta_iwgsc_3b_v1_4086848: 1-1365 Triticum aestivum
Traes_3B_BE6D0DAE01 5.0kb upstream 5.0kb upstream 1947 true ta_iwgsc_3b_v1_4086848: 1366-3312 Triticum aestivum
Traes_3B_BE6D0DAE01 5.0kb upstream 5.0kb upstream 1 false ta_iwgsc_3b_v1_4086848: 3312-3312 Triticum aestivum
Traes_3B_BE6D0DAE01 5.0kb downstream 5.0kb downstream 3311 true ta_iwgsc_3b_v1_4086848: 1-3311 Triticum aestivum
Traes_3B_BE6D0DAE01 5.0kb downstream 5.0kb downstream 1365 false ta_iwgsc_3b_v1_4086848: 1-1365 Triticum aestivum
Traes_3B_BE6D0DAE01 10.0kb upstream 10.0kb upstream 1947 true ta_iwgsc_3b_v1_4086848: 1366-3312 Triticum aestivum
Traes_3B_BE6D0DAE01 10.0kb upstream 10.0kb upstream 1 false ta_iwgsc_3b_v1_4086848: 3312-3312 Triticum aestivum
Traes_3B_BE6D0DAE01 10.0kb downstream 10.0kb downstream 3311 true ta_iwgsc_3b_v1_4086848: 1-3311 Triticum aestivum
Traes_3B_BE6D0DAE01 10.0kb downstream 10.0kb downstream 1365 false ta_iwgsc_3b_v1_4086848: 1-1365 Triticum aestivum

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570588 5269 Grass View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain