Gene : Traes_5BL_6CA886867 T. aestivum v2.2
Defline:  (1 of 20) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  2
Name:  ? Traes_5BL_6CA886867 Secondary Identifier:  ? PAC:31896205
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Traes_5BL_6CA886867 0.5kb upstream 0.5kb upstream 4862 true ta_iwgsc_5bl_v1_10834372: 4809-9670 Triticum aestivum
Traes_5BL_6CA886867 0.5kb upstream 0.5kb upstream 500 false ta_iwgsc_5bl_v1_10834372: 4809-5308 Triticum aestivum
Traes_5BL_6CA886867 0.5kb downstream 0.5kb downstream 4862 true ta_iwgsc_5bl_v1_10834372: 5309-10170 Triticum aestivum
Traes_5BL_6CA886867 0.5kb downstream 0.5kb downstream 500 false ta_iwgsc_5bl_v1_10834372: 9671-10170 Triticum aestivum
Traes_5BL_6CA886867 1.0kb upstream 1.0kb upstream 5362 true ta_iwgsc_5bl_v1_10834372: 4309-9670 Triticum aestivum
Traes_5BL_6CA886867 1.0kb upstream 1.0kb upstream 1000 false ta_iwgsc_5bl_v1_10834372: 4309-5308 Triticum aestivum
Traes_5BL_6CA886867 1.0kb downstream 1.0kb downstream 5362 true ta_iwgsc_5bl_v1_10834372: 5309-10670 Triticum aestivum
Traes_5BL_6CA886867 1.0kb downstream 1.0kb downstream 1000 false ta_iwgsc_5bl_v1_10834372: 9671-10670 Triticum aestivum
Traes_5BL_6CA886867 2.0kb upstream 2.0kb upstream 6362 true ta_iwgsc_5bl_v1_10834372: 3309-9670 Triticum aestivum
Traes_5BL_6CA886867 2.0kb upstream 2.0kb upstream 2000 false ta_iwgsc_5bl_v1_10834372: 3309-5308 Triticum aestivum
Traes_5BL_6CA886867 2.0kb downstream 2.0kb downstream 6362 true ta_iwgsc_5bl_v1_10834372: 5309-11670 Triticum aestivum
Traes_5BL_6CA886867 2.0kb downstream 2.0kb downstream 2000 false ta_iwgsc_5bl_v1_10834372: 9671-11670 Triticum aestivum
Traes_5BL_6CA886867 5.0kb upstream 5.0kb upstream 9362 true ta_iwgsc_5bl_v1_10834372: 309-9670 Triticum aestivum
Traes_5BL_6CA886867 5.0kb upstream 5.0kb upstream 5000 false ta_iwgsc_5bl_v1_10834372: 309-5308 Triticum aestivum
Traes_5BL_6CA886867 5.0kb downstream 5.0kb downstream 8303 true ta_iwgsc_5bl_v1_10834372: 5309-13611 Triticum aestivum
Traes_5BL_6CA886867 5.0kb downstream 5.0kb downstream 3941 false ta_iwgsc_5bl_v1_10834372: 9671-13611 Triticum aestivum
Traes_5BL_6CA886867 10.0kb upstream 10.0kb upstream 9670 true ta_iwgsc_5bl_v1_10834372: 1-9670 Triticum aestivum
Traes_5BL_6CA886867 10.0kb upstream 10.0kb upstream 5308 false ta_iwgsc_5bl_v1_10834372: 1-5308 Triticum aestivum
Traes_5BL_6CA886867 10.0kb downstream 10.0kb downstream 8303 true ta_iwgsc_5bl_v1_10834372: 5309-13611 Triticum aestivum
Traes_5BL_6CA886867 10.0kb downstream 10.0kb downstream 3941 false ta_iwgsc_5bl_v1_10834372: 9671-13611 Triticum aestivum

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571390 5269 Grass View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain