Gene : orange1.1g002878m.g C. sinensis v1.1
Defline:  (1 of 1) PTHR23160:SF3 - SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED Genomic Order:  204
Name:  ? orange1.1g002878m.g Secondary Identifier:  ? PAC:18108076
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
orange1.1g002878m.g 0.5kb upstream 0.5kb upstream 6236 true scaffold00004: 1517261-1523496 Citrus sinensis
orange1.1g002878m.g 0.5kb upstream 0.5kb upstream 500 false scaffold00004: 1522997-1523496 Citrus sinensis
orange1.1g002878m.g 0.5kb downstream 0.5kb downstream 6236 true scaffold00004: 1516761-1522996 Citrus sinensis
orange1.1g002878m.g 0.5kb downstream 0.5kb downstream 500 false scaffold00004: 1516761-1517260 Citrus sinensis
orange1.1g002878m.g 1.0kb upstream 1.0kb upstream 6736 true scaffold00004: 1517261-1523996 Citrus sinensis
orange1.1g002878m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold00004: 1522997-1523996 Citrus sinensis
orange1.1g002878m.g 1.0kb downstream 1.0kb downstream 6736 true scaffold00004: 1516261-1522996 Citrus sinensis
orange1.1g002878m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold00004: 1516261-1517260 Citrus sinensis
orange1.1g002878m.g 2.0kb upstream 2.0kb upstream 7736 true scaffold00004: 1517261-1524996 Citrus sinensis
orange1.1g002878m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold00004: 1522997-1524996 Citrus sinensis
orange1.1g002878m.g 2.0kb downstream 2.0kb downstream 7736 true scaffold00004: 1515261-1522996 Citrus sinensis
orange1.1g002878m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold00004: 1515261-1517260 Citrus sinensis
orange1.1g002878m.g 5.0kb upstream 5.0kb upstream 10736 true scaffold00004: 1517261-1527996 Citrus sinensis
orange1.1g002878m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold00004: 1522997-1527996 Citrus sinensis
orange1.1g002878m.g 5.0kb downstream 5.0kb downstream 10736 true scaffold00004: 1512261-1522996 Citrus sinensis
orange1.1g002878m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold00004: 1512261-1517260 Citrus sinensis
orange1.1g002878m.g 10.0kb upstream 10.0kb upstream 15736 true scaffold00004: 1517261-1532996 Citrus sinensis
orange1.1g002878m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold00004: 1522997-1532996 Citrus sinensis
orange1.1g002878m.g 10.0kb downstream 10.0kb downstream 15736 true scaffold00004: 1507261-1522996 Citrus sinensis
orange1.1g002878m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold00004: 1507261-1517260 Citrus sinensis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124345606 5266 SBM View MSA
124238407 5268 Malvidae View MSA
124068908 5270 Rosid View MSA
123737284 5271 Pentapetalae View MSA
122789700 5272 Eudicot View MSA
122042808 5273 Angiosperm View MSA
121349481 5274 Embryophyte View MSA
123381327 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain