Gene : orange1.1g044623m.g C. sinensis v1.1
Defline:  (1 of 1) PTHR31480:SF2 - PHYTOENE SYNTHASE, CHLOROPLASTIC Genomic Order:  10
Name:  ? orange1.1g044623m.g Secondary Identifier:  ? PAC:18123242
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csinensis CAROTENOID-PWY Citrus sinensis pathologic  
Csinensis PWY-6475 Citrus sinensis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
orange1.1g044623m.g 0.5kb upstream 0.5kb upstream 5390 true scaffold00091: 64686-70075 Citrus sinensis
orange1.1g044623m.g 0.5kb upstream 0.5kb upstream 500 false scaffold00091: 69576-70075 Citrus sinensis
orange1.1g044623m.g 0.5kb downstream 0.5kb downstream 5390 true scaffold00091: 64186-69575 Citrus sinensis
orange1.1g044623m.g 0.5kb downstream 0.5kb downstream 500 false scaffold00091: 64186-64685 Citrus sinensis
orange1.1g044623m.g 1.0kb upstream 1.0kb upstream 5890 true scaffold00091: 64686-70575 Citrus sinensis
orange1.1g044623m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold00091: 69576-70575 Citrus sinensis
orange1.1g044623m.g 1.0kb downstream 1.0kb downstream 5890 true scaffold00091: 63686-69575 Citrus sinensis
orange1.1g044623m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold00091: 63686-64685 Citrus sinensis
orange1.1g044623m.g 2.0kb upstream 2.0kb upstream 6890 true scaffold00091: 64686-71575 Citrus sinensis
orange1.1g044623m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold00091: 69576-71575 Citrus sinensis
orange1.1g044623m.g 2.0kb downstream 2.0kb downstream 6890 true scaffold00091: 62686-69575 Citrus sinensis
orange1.1g044623m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold00091: 62686-64685 Citrus sinensis
orange1.1g044623m.g 5.0kb upstream 5.0kb upstream 9890 true scaffold00091: 64686-74575 Citrus sinensis
orange1.1g044623m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold00091: 69576-74575 Citrus sinensis
orange1.1g044623m.g 5.0kb downstream 5.0kb downstream 9890 true scaffold00091: 59686-69575 Citrus sinensis
orange1.1g044623m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold00091: 59686-64685 Citrus sinensis
orange1.1g044623m.g 10.0kb upstream 10.0kb upstream 14890 true scaffold00091: 64686-79575 Citrus sinensis
orange1.1g044623m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold00091: 69576-79575 Citrus sinensis
orange1.1g044623m.g 10.0kb downstream 10.0kb downstream 14890 true scaffold00091: 54686-69575 Citrus sinensis
orange1.1g044623m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold00091: 54686-64685 Citrus sinensis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
124345575 5266 SBM View MSA
124251202 5268 Malvidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain