Gene : orange1.1g011835m.g C. sinensis v1.1
Defline:  (1 of 1) PTHR13789:SF207 - LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC Genomic Order:  1
Name:  ? orange1.1g011835m.g Secondary Identifier:  ? PAC:18104767
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csinensis CAROTENOID-PWY Citrus sinensis pathologic  
Csinensis PWY-5175 Citrus sinensis pathologic  
Csinensis PWY-5946 Citrus sinensis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
orange1.1g011835m.g 0.5kb upstream 0.5kb upstream 5038 true scaffold00146: 39299-44336 Citrus sinensis
orange1.1g011835m.g 0.5kb upstream 0.5kb upstream 500 false scaffold00146: 43837-44336 Citrus sinensis
orange1.1g011835m.g 0.5kb downstream 0.5kb downstream 5038 true scaffold00146: 38799-43836 Citrus sinensis
orange1.1g011835m.g 0.5kb downstream 0.5kb downstream 500 false scaffold00146: 38799-39298 Citrus sinensis
orange1.1g011835m.g 1.0kb upstream 1.0kb upstream 5538 true scaffold00146: 39299-44836 Citrus sinensis
orange1.1g011835m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold00146: 43837-44836 Citrus sinensis
orange1.1g011835m.g 1.0kb downstream 1.0kb downstream 5538 true scaffold00146: 38299-43836 Citrus sinensis
orange1.1g011835m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold00146: 38299-39298 Citrus sinensis
orange1.1g011835m.g 2.0kb upstream 2.0kb upstream 6538 true scaffold00146: 39299-45836 Citrus sinensis
orange1.1g011835m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold00146: 43837-45836 Citrus sinensis
orange1.1g011835m.g 2.0kb downstream 2.0kb downstream 6538 true scaffold00146: 37299-43836 Citrus sinensis
orange1.1g011835m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold00146: 37299-39298 Citrus sinensis
orange1.1g011835m.g 5.0kb upstream 5.0kb upstream 9538 true scaffold00146: 39299-48836 Citrus sinensis
orange1.1g011835m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold00146: 43837-48836 Citrus sinensis
orange1.1g011835m.g 5.0kb downstream 5.0kb downstream 9538 true scaffold00146: 34299-43836 Citrus sinensis
orange1.1g011835m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold00146: 34299-39298 Citrus sinensis
orange1.1g011835m.g 10.0kb upstream 10.0kb upstream 14538 true scaffold00146: 39299-53836 Citrus sinensis
orange1.1g011835m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold00146: 43837-53836 Citrus sinensis
orange1.1g011835m.g 10.0kb downstream 10.0kb downstream 14538 true scaffold00146: 29299-43836 Citrus sinensis
orange1.1g011835m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold00146: 29299-39298 Citrus sinensis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124342530 5266 SBM View MSA
124243060 5268 Malvidae View MSA
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain