Gene : orange1.1g014377m.g C. sinensis v1.1
Defline:  (1 of 1) PTHR13789:SF249 - LYCOPENE BETA CYCLASE, CHLOROPLASTIC Genomic Order:  6
Name:  ? orange1.1g014377m.g Secondary Identifier:  ? PAC:18099199
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csinensis CAROTENOID-PWY Citrus sinensis pathologic  
Csinensis PWY-5943 Citrus sinensis pathologic  
Csinensis PWY-5947 Citrus sinensis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
orange1.1g014377m.g 0.5kb upstream 0.5kb upstream 2583 true scaffold00218: 25474-28056 Citrus sinensis
orange1.1g014377m.g 0.5kb upstream 0.5kb upstream 500 false scaffold00218: 27557-28056 Citrus sinensis
orange1.1g014377m.g 0.5kb downstream 0.5kb downstream 2583 true scaffold00218: 24974-27556 Citrus sinensis
orange1.1g014377m.g 0.5kb downstream 0.5kb downstream 500 false scaffold00218: 24974-25473 Citrus sinensis
orange1.1g014377m.g 1.0kb upstream 1.0kb upstream 3083 true scaffold00218: 25474-28556 Citrus sinensis
orange1.1g014377m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold00218: 27557-28556 Citrus sinensis
orange1.1g014377m.g 1.0kb downstream 1.0kb downstream 3083 true scaffold00218: 24474-27556 Citrus sinensis
orange1.1g014377m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold00218: 24474-25473 Citrus sinensis
orange1.1g014377m.g 2.0kb upstream 2.0kb upstream 4083 true scaffold00218: 25474-29556 Citrus sinensis
orange1.1g014377m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold00218: 27557-29556 Citrus sinensis
orange1.1g014377m.g 2.0kb downstream 2.0kb downstream 4083 true scaffold00218: 23474-27556 Citrus sinensis
orange1.1g014377m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold00218: 23474-25473 Citrus sinensis
orange1.1g014377m.g 5.0kb upstream 5.0kb upstream 7083 true scaffold00218: 25474-32556 Citrus sinensis
orange1.1g014377m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold00218: 27557-32556 Citrus sinensis
orange1.1g014377m.g 5.0kb downstream 5.0kb downstream 7083 true scaffold00218: 20474-27556 Citrus sinensis
orange1.1g014377m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold00218: 20474-25473 Citrus sinensis
orange1.1g014377m.g 10.0kb upstream 10.0kb upstream 12083 true scaffold00218: 25474-37556 Citrus sinensis
orange1.1g014377m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold00218: 27557-37556 Citrus sinensis
orange1.1g014377m.g 10.0kb downstream 10.0kb downstream 12083 true scaffold00218: 15474-27556 Citrus sinensis
orange1.1g014377m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold00218: 15474-25473 Citrus sinensis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124345045 5266 SBM View MSA
124240984 5268 Malvidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain