Gene : orange1.1g044684m.g C. sinensis v1.1
Defline:  (1 of 1) PTHR10543:SF48 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED6, CHLOROPLASTIC Genomic Order:  1
Name:  ? orange1.1g044684m.g Secondary Identifier:  ? PAC:18119306
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csinensis PWY-695 Citrus sinensis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
orange1.1g044684m.g 0.5kb upstream 0.5kb upstream 2138 true scaffold00496: 22270-24407 Citrus sinensis
orange1.1g044684m.g 0.5kb upstream 0.5kb upstream 500 false scaffold00496: 23908-24407 Citrus sinensis
orange1.1g044684m.g 0.5kb downstream 0.5kb downstream 2138 true scaffold00496: 21770-23907 Citrus sinensis
orange1.1g044684m.g 0.5kb downstream 0.5kb downstream 500 false scaffold00496: 21770-22269 Citrus sinensis
orange1.1g044684m.g 1.0kb upstream 1.0kb upstream 2638 true scaffold00496: 22270-24907 Citrus sinensis
orange1.1g044684m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold00496: 23908-24907 Citrus sinensis
orange1.1g044684m.g 1.0kb downstream 1.0kb downstream 2638 true scaffold00496: 21270-23907 Citrus sinensis
orange1.1g044684m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold00496: 21270-22269 Citrus sinensis
orange1.1g044684m.g 2.0kb upstream 2.0kb upstream 3638 true scaffold00496: 22270-25907 Citrus sinensis
orange1.1g044684m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold00496: 23908-25907 Citrus sinensis
orange1.1g044684m.g 2.0kb downstream 2.0kb downstream 3638 true scaffold00496: 20270-23907 Citrus sinensis
orange1.1g044684m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold00496: 20270-22269 Citrus sinensis
orange1.1g044684m.g 5.0kb upstream 5.0kb upstream 6638 true scaffold00496: 22270-28907 Citrus sinensis
orange1.1g044684m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold00496: 23908-28907 Citrus sinensis
orange1.1g044684m.g 5.0kb downstream 5.0kb downstream 6638 true scaffold00496: 17270-23907 Citrus sinensis
orange1.1g044684m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold00496: 17270-22269 Citrus sinensis
orange1.1g044684m.g 10.0kb upstream 10.0kb upstream 11638 true scaffold00496: 22270-33907 Citrus sinensis
orange1.1g044684m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold00496: 23908-33907 Citrus sinensis
orange1.1g044684m.g 10.0kb downstream 10.0kb downstream 11638 true scaffold00496: 12270-23907 Citrus sinensis
orange1.1g044684m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold00496: 12270-22269 Citrus sinensis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124344932 5266 SBM View MSA
124242947 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain