Gene : orange1.1g008405m.g C. sinensis v1.1
Defline:  (1 of 2) PTHR22594:SF34 - ASPARAGINE--TRNA LIGASE, MITOCHONDRIAL-RELATED Genomic Order:  31
Name:  ? orange1.1g008405m.g Secondary Identifier:  ? PAC:18104916
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csinensis TRNA-CHARGING-PWY Citrus sinensis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
orange1.1g008405m.g 0.5kb upstream 0.5kb upstream 4238 true scaffold00106: 410258-414495 Citrus sinensis
orange1.1g008405m.g 0.5kb upstream 0.5kb upstream 500 false scaffold00106: 410258-410757 Citrus sinensis
orange1.1g008405m.g 0.5kb downstream 0.5kb downstream 4238 true scaffold00106: 410758-414995 Citrus sinensis
orange1.1g008405m.g 0.5kb downstream 0.5kb downstream 500 false scaffold00106: 414496-414995 Citrus sinensis
orange1.1g008405m.g 1.0kb upstream 1.0kb upstream 4738 true scaffold00106: 409758-414495 Citrus sinensis
orange1.1g008405m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold00106: 409758-410757 Citrus sinensis
orange1.1g008405m.g 1.0kb downstream 1.0kb downstream 4738 true scaffold00106: 410758-415495 Citrus sinensis
orange1.1g008405m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold00106: 414496-415495 Citrus sinensis
orange1.1g008405m.g 2.0kb upstream 2.0kb upstream 5738 true scaffold00106: 408758-414495 Citrus sinensis
orange1.1g008405m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold00106: 408758-410757 Citrus sinensis
orange1.1g008405m.g 2.0kb downstream 2.0kb downstream 5738 true scaffold00106: 410758-416495 Citrus sinensis
orange1.1g008405m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold00106: 414496-416495 Citrus sinensis
orange1.1g008405m.g 5.0kb upstream 5.0kb upstream 8738 true scaffold00106: 405758-414495 Citrus sinensis
orange1.1g008405m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold00106: 405758-410757 Citrus sinensis
orange1.1g008405m.g 5.0kb downstream 5.0kb downstream 8738 true scaffold00106: 410758-419495 Citrus sinensis
orange1.1g008405m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold00106: 414496-419495 Citrus sinensis
orange1.1g008405m.g 10.0kb upstream 10.0kb upstream 13738 true scaffold00106: 400758-414495 Citrus sinensis
orange1.1g008405m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold00106: 400758-410757 Citrus sinensis
orange1.1g008405m.g 10.0kb downstream 10.0kb downstream 13738 true scaffold00106: 410758-424495 Citrus sinensis
orange1.1g008405m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold00106: 414496-424495 Citrus sinensis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124344559 5266 SBM View MSA
124246286 5268 Malvidae View MSA
124074798 5270 Rosid View MSA
123738885 5271 Pentapetalae View MSA
122790023 5272 Eudicot View MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain