Gene : Eucgr.A00198 E. grandis v2.0
Defline:  (1 of 4) 6.2.1.1//6.2.1.2 - Acetate--CoA ligase / Acyl-activating enzyme // Butyrate--CoA ligase / Fatty acid thiokinase (medium chain) Genomic Order:  388
Name:  ? Eucgr.A00198 Secondary Identifier:  ? PAC:32048015
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Sequence Feature Displayer

Ontology Annotation Displayer

13 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-1121 Eucalyptus grandis pathologic  
Egrandis PWY-321 Eucalyptus grandis pathologic  
Egrandis PWY-5136 Eucalyptus grandis pathologic  
Egrandis PWY-5143 Eucalyptus grandis pathologic  
Egrandis PWY-5147 Eucalyptus grandis pathologic  
Egrandis PWY-5156 Eucalyptus grandis pathologic  
Egrandis PWY-561 Eucalyptus grandis pathologic  
Egrandis PWY-5885 Eucalyptus grandis pathologic  
Egrandis PWY-5971 Eucalyptus grandis pathologic  
Egrandis PWY-5989 Eucalyptus grandis pathologic  
Egrandis PWY66-21 Eucalyptus grandis pathologic  
Egrandis PWY-6733 Eucalyptus grandis pathologic  
Egrandis PWY-6803 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00198 0.5kb upstream 0.5kb upstream 4190 true Chr01: 7859067-7863256 Eucalyptus grandis
Eucgr.A00198 0.5kb upstream 0.5kb upstream 500 false Chr01: 7859067-7859566 Eucalyptus grandis
Eucgr.A00198 0.5kb downstream 0.5kb downstream 4190 true Chr01: 7859567-7863756 Eucalyptus grandis
Eucgr.A00198 0.5kb downstream 0.5kb downstream 500 false Chr01: 7863257-7863756 Eucalyptus grandis
Eucgr.A00198 1.0kb upstream 1.0kb upstream 4690 true Chr01: 7858567-7863256 Eucalyptus grandis
Eucgr.A00198 1.0kb upstream 1.0kb upstream 1000 false Chr01: 7858567-7859566 Eucalyptus grandis
Eucgr.A00198 1.0kb downstream 1.0kb downstream 4690 true Chr01: 7859567-7864256 Eucalyptus grandis
Eucgr.A00198 1.0kb downstream 1.0kb downstream 1000 false Chr01: 7863257-7864256 Eucalyptus grandis
Eucgr.A00198 2.0kb upstream 2.0kb upstream 5690 true Chr01: 7857567-7863256 Eucalyptus grandis
Eucgr.A00198 2.0kb upstream 2.0kb upstream 2000 false Chr01: 7857567-7859566 Eucalyptus grandis
Eucgr.A00198 2.0kb downstream 2.0kb downstream 5690 true Chr01: 7859567-7865256 Eucalyptus grandis
Eucgr.A00198 2.0kb downstream 2.0kb downstream 2000 false Chr01: 7863257-7865256 Eucalyptus grandis
Eucgr.A00198 5.0kb upstream 5.0kb upstream 8690 true Chr01: 7854567-7863256 Eucalyptus grandis
Eucgr.A00198 5.0kb upstream 5.0kb upstream 5000 false Chr01: 7854567-7859566 Eucalyptus grandis
Eucgr.A00198 5.0kb downstream 5.0kb downstream 8690 true Chr01: 7859567-7868256 Eucalyptus grandis
Eucgr.A00198 5.0kb downstream 5.0kb downstream 5000 false Chr01: 7863257-7868256 Eucalyptus grandis
Eucgr.A00198 10.0kb upstream 10.0kb upstream 13690 true Chr01: 7849567-7863256 Eucalyptus grandis
Eucgr.A00198 10.0kb upstream 10.0kb upstream 10000 false Chr01: 7849567-7859566 Eucalyptus grandis
Eucgr.A00198 10.0kb downstream 10.0kb downstream 13690 true Chr01: 7859567-7873256 Eucalyptus grandis
Eucgr.A00198 10.0kb downstream 10.0kb downstream 10000 false Chr01: 7863257-7873256 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067015 5270 Rosid View MSA
123740206 5271 Pentapetalae View MSA
122793693 5272 Eudicot View MSA
122045241 5273 Angiosperm View MSA
121345073 5274 Embryophyte View MSA
123427881 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.11733 0.0 14.2423    
cufflinks 2.71831 0.0 6.82788   Low
cufflinks 7.64448 0.0 17.5065    
cufflinks 2.57887 0.0 6.51067   Low
cufflinks 5.54008 0.0 12.9939    
cufflinks 8.13099 0.0 18.5411    

0 Strain