Gene : Eucgr.A00054 E. grandis v2.0
Defline:  (1 of 3) PTHR22976 - BIOTIN SYNTHASE Genomic Order:  64
Name:  ? Eucgr.A00054 Secondary Identifier:  ? PAC:32047237
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY0-1507 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00054 0.5kb upstream 0.5kb upstream 6433 true Chr01: 1245950-1252382 Eucalyptus grandis
Eucgr.A00054 0.5kb upstream 0.5kb upstream 500 false Chr01: 1245950-1246449 Eucalyptus grandis
Eucgr.A00054 0.5kb downstream 0.5kb downstream 6433 true Chr01: 1246450-1252882 Eucalyptus grandis
Eucgr.A00054 0.5kb downstream 0.5kb downstream 500 false Chr01: 1252383-1252882 Eucalyptus grandis
Eucgr.A00054 1.0kb upstream 1.0kb upstream 6933 true Chr01: 1245450-1252382 Eucalyptus grandis
Eucgr.A00054 1.0kb upstream 1.0kb upstream 1000 false Chr01: 1245450-1246449 Eucalyptus grandis
Eucgr.A00054 1.0kb downstream 1.0kb downstream 6933 true Chr01: 1246450-1253382 Eucalyptus grandis
Eucgr.A00054 1.0kb downstream 1.0kb downstream 1000 false Chr01: 1252383-1253382 Eucalyptus grandis
Eucgr.A00054 2.0kb upstream 2.0kb upstream 7933 true Chr01: 1244450-1252382 Eucalyptus grandis
Eucgr.A00054 2.0kb upstream 2.0kb upstream 2000 false Chr01: 1244450-1246449 Eucalyptus grandis
Eucgr.A00054 2.0kb downstream 2.0kb downstream 7933 true Chr01: 1246450-1254382 Eucalyptus grandis
Eucgr.A00054 2.0kb downstream 2.0kb downstream 2000 false Chr01: 1252383-1254382 Eucalyptus grandis
Eucgr.A00054 5.0kb upstream 5.0kb upstream 10933 true Chr01: 1241450-1252382 Eucalyptus grandis
Eucgr.A00054 5.0kb upstream 5.0kb upstream 5000 false Chr01: 1241450-1246449 Eucalyptus grandis
Eucgr.A00054 5.0kb downstream 5.0kb downstream 10933 true Chr01: 1246450-1257382 Eucalyptus grandis
Eucgr.A00054 5.0kb downstream 5.0kb downstream 5000 false Chr01: 1252383-1257382 Eucalyptus grandis
Eucgr.A00054 10.0kb upstream 10.0kb upstream 15933 true Chr01: 1236450-1252382 Eucalyptus grandis
Eucgr.A00054 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1236450-1246449 Eucalyptus grandis
Eucgr.A00054 10.0kb downstream 10.0kb downstream 15933 true Chr01: 1246450-1262382 Eucalyptus grandis
Eucgr.A00054 10.0kb downstream 10.0kb downstream 10000 false Chr01: 1252383-1262382 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124069050 5270 Rosid View MSA
123738436 5271 Pentapetalae View MSA
122791352 5272 Eudicot View MSA
122044097 5273 Angiosperm View MSA
121346101 5274 Embryophyte View MSA
123424620 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.1927 0.0 19.6584    
cufflinks 3.58895 0.0 10.9544   Low
cufflinks 7.13645 0.0 19.3013    
cufflinks 4.0991 0.0 12.6418    
cufflinks 4.60116 0.0 13.355    
cufflinks 9.74766 0.0 28.575   High

0 Strain