Gene : Eucgr.A00011 E. grandis v2.0
Defline:  (1 of 3) PTHR30560//PTHR30560:SF4 - TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE Genomic Order:  155
Name:  ? Eucgr.A00011 Secondary Identifier:  ? PAC:32045873
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00011 0.5kb upstream 0.5kb upstream 2879 true Chr01: 2705427-2708305 Eucalyptus grandis
Eucgr.A00011 0.5kb upstream 0.5kb upstream 500 false Chr01: 2707806-2708305 Eucalyptus grandis
Eucgr.A00011 0.5kb downstream 0.5kb downstream 2879 true Chr01: 2704927-2707805 Eucalyptus grandis
Eucgr.A00011 0.5kb downstream 0.5kb downstream 500 false Chr01: 2704927-2705426 Eucalyptus grandis
Eucgr.A00011 1.0kb upstream 1.0kb upstream 3379 true Chr01: 2705427-2708805 Eucalyptus grandis
Eucgr.A00011 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2707806-2708805 Eucalyptus grandis
Eucgr.A00011 1.0kb downstream 1.0kb downstream 3379 true Chr01: 2704427-2707805 Eucalyptus grandis
Eucgr.A00011 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2704427-2705426 Eucalyptus grandis
Eucgr.A00011 2.0kb upstream 2.0kb upstream 4379 true Chr01: 2705427-2709805 Eucalyptus grandis
Eucgr.A00011 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2707806-2709805 Eucalyptus grandis
Eucgr.A00011 2.0kb downstream 2.0kb downstream 4379 true Chr01: 2703427-2707805 Eucalyptus grandis
Eucgr.A00011 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2703427-2705426 Eucalyptus grandis
Eucgr.A00011 5.0kb upstream 5.0kb upstream 7379 true Chr01: 2705427-2712805 Eucalyptus grandis
Eucgr.A00011 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2707806-2712805 Eucalyptus grandis
Eucgr.A00011 5.0kb downstream 5.0kb downstream 7379 true Chr01: 2700427-2707805 Eucalyptus grandis
Eucgr.A00011 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2700427-2705426 Eucalyptus grandis
Eucgr.A00011 10.0kb upstream 10.0kb upstream 12379 true Chr01: 2705427-2717805 Eucalyptus grandis
Eucgr.A00011 10.0kb upstream 10.0kb upstream 10000 false Chr01: 2707806-2717805 Eucalyptus grandis
Eucgr.A00011 10.0kb downstream 10.0kb downstream 12379 true Chr01: 2695427-2707805 Eucalyptus grandis
Eucgr.A00011 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2695427-2705426 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073258 5270 Rosid View MSA
123748719 5271 Pentapetalae View MSA
122795151 5272 Eudicot View MSA
122048682 5273 Angiosperm View MSA
121348209 5274 Embryophyte View MSA
123380773 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.88363 0.0 8.11063    
cufflinks 0.827648 0.0 2.66458 Low  
cufflinks 1.29257 0.0 3.94023    
cufflinks 1.31859 0.0 3.97933    
cufflinks 0.581783 0.0 1.96955 Low Low
cufflinks 6.19853 0.0 16.2546   High

0 Strain