Gene : Eucgr.A00652 E. grandis v2.0
Defline:  (1 of 527) PF13041 - PPR repeat family (PPR_2) Genomic Order:  736
Name:  ? Eucgr.A00652 Secondary Identifier:  ? PAC:32046510
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00652 0.5kb upstream 0.5kb upstream 2245 true Chr01: 15282935-15285179 Eucalyptus grandis
Eucgr.A00652 0.5kb upstream 0.5kb upstream 500 false Chr01: 15282935-15283434 Eucalyptus grandis
Eucgr.A00652 0.5kb downstream 0.5kb downstream 2245 true Chr01: 15283435-15285679 Eucalyptus grandis
Eucgr.A00652 0.5kb downstream 0.5kb downstream 500 false Chr01: 15285180-15285679 Eucalyptus grandis
Eucgr.A00652 1.0kb upstream 1.0kb upstream 2745 true Chr01: 15282435-15285179 Eucalyptus grandis
Eucgr.A00652 1.0kb upstream 1.0kb upstream 1000 false Chr01: 15282435-15283434 Eucalyptus grandis
Eucgr.A00652 1.0kb downstream 1.0kb downstream 2745 true Chr01: 15283435-15286179 Eucalyptus grandis
Eucgr.A00652 1.0kb downstream 1.0kb downstream 1000 false Chr01: 15285180-15286179 Eucalyptus grandis
Eucgr.A00652 2.0kb upstream 2.0kb upstream 3745 true Chr01: 15281435-15285179 Eucalyptus grandis
Eucgr.A00652 2.0kb upstream 2.0kb upstream 2000 false Chr01: 15281435-15283434 Eucalyptus grandis
Eucgr.A00652 2.0kb downstream 2.0kb downstream 3745 true Chr01: 15283435-15287179 Eucalyptus grandis
Eucgr.A00652 2.0kb downstream 2.0kb downstream 2000 false Chr01: 15285180-15287179 Eucalyptus grandis
Eucgr.A00652 5.0kb upstream 5.0kb upstream 6745 true Chr01: 15278435-15285179 Eucalyptus grandis
Eucgr.A00652 5.0kb upstream 5.0kb upstream 5000 false Chr01: 15278435-15283434 Eucalyptus grandis
Eucgr.A00652 5.0kb downstream 5.0kb downstream 6745 true Chr01: 15283435-15290179 Eucalyptus grandis
Eucgr.A00652 5.0kb downstream 5.0kb downstream 5000 false Chr01: 15285180-15290179 Eucalyptus grandis
Eucgr.A00652 10.0kb upstream 10.0kb upstream 11745 true Chr01: 15273435-15285179 Eucalyptus grandis
Eucgr.A00652 10.0kb upstream 10.0kb upstream 10000 false Chr01: 15273435-15283434 Eucalyptus grandis
Eucgr.A00652 10.0kb downstream 10.0kb downstream 11745 true Chr01: 15283435-15295179 Eucalyptus grandis
Eucgr.A00652 10.0kb downstream 10.0kb downstream 10000 false Chr01: 15285180-15295179 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067693 5270 Rosid View MSA
123738221 5271 Pentapetalae View MSA
122794420 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.15707 0.0 3.21626    
cufflinks 0.938562 0.0 2.65814    
cufflinks 0.444272 0.0 1.36556    
cufflinks 2.43005 0.0 6.21839   High
cufflinks 0.653048 0.0 1.92652 Low  
cufflinks 0.334155 0.0 1.07466 Low Low

0 Strain