Gene : Eucgr.A00535 E. grandis v2.0
Defline:  (1 of 1) PTHR11048:SF18 - CHLOROPHYLL SYNTHASE, CHLOROPLASTIC Genomic Order:  832
Name:  ? Eucgr.A00535 Secondary Identifier:  ? PAC:32046422
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5064 Eucalyptus grandis pathologic  
Egrandis PWY-5068 Eucalyptus grandis pathologic  
Egrandis PWY-5086 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00535 0.5kb upstream 0.5kb upstream 7686 true Chr01: 16927128-16934813 Eucalyptus grandis
Eucgr.A00535 0.5kb upstream 0.5kb upstream 500 false Chr01: 16934314-16934813 Eucalyptus grandis
Eucgr.A00535 0.5kb downstream 0.5kb downstream 7686 true Chr01: 16926628-16934313 Eucalyptus grandis
Eucgr.A00535 0.5kb downstream 0.5kb downstream 500 false Chr01: 16926628-16927127 Eucalyptus grandis
Eucgr.A00535 1.0kb upstream 1.0kb upstream 8186 true Chr01: 16927128-16935313 Eucalyptus grandis
Eucgr.A00535 1.0kb upstream 1.0kb upstream 1000 false Chr01: 16934314-16935313 Eucalyptus grandis
Eucgr.A00535 1.0kb downstream 1.0kb downstream 8186 true Chr01: 16926128-16934313 Eucalyptus grandis
Eucgr.A00535 1.0kb downstream 1.0kb downstream 1000 false Chr01: 16926128-16927127 Eucalyptus grandis
Eucgr.A00535 2.0kb upstream 2.0kb upstream 9186 true Chr01: 16927128-16936313 Eucalyptus grandis
Eucgr.A00535 2.0kb upstream 2.0kb upstream 2000 false Chr01: 16934314-16936313 Eucalyptus grandis
Eucgr.A00535 2.0kb downstream 2.0kb downstream 9186 true Chr01: 16925128-16934313 Eucalyptus grandis
Eucgr.A00535 2.0kb downstream 2.0kb downstream 2000 false Chr01: 16925128-16927127 Eucalyptus grandis
Eucgr.A00535 5.0kb upstream 5.0kb upstream 12186 true Chr01: 16927128-16939313 Eucalyptus grandis
Eucgr.A00535 5.0kb upstream 5.0kb upstream 5000 false Chr01: 16934314-16939313 Eucalyptus grandis
Eucgr.A00535 5.0kb downstream 5.0kb downstream 12186 true Chr01: 16922128-16934313 Eucalyptus grandis
Eucgr.A00535 5.0kb downstream 5.0kb downstream 5000 false Chr01: 16922128-16927127 Eucalyptus grandis
Eucgr.A00535 10.0kb upstream 10.0kb upstream 17186 true Chr01: 16927128-16944313 Eucalyptus grandis
Eucgr.A00535 10.0kb upstream 10.0kb upstream 10000 false Chr01: 16934314-16944313 Eucalyptus grandis
Eucgr.A00535 10.0kb downstream 10.0kb downstream 17186 true Chr01: 16917128-16934313 Eucalyptus grandis
Eucgr.A00535 10.0kb downstream 10.0kb downstream 10000 false Chr01: 16917128-16927127 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067560 5270 Rosid View MSA
123737432 5271 Pentapetalae View MSA
122786780 5272 Eudicot View MSA
122042815 5273 Angiosperm View MSA
121346314 5274 Embryophyte View MSA
123424294 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.4359 0.0 35.9417    
cufflinks 6.09778 0.0 17.9048   Low
cufflinks 11.0045 0.0 29.9591    
cufflinks 7.10687 0.0 16.8296    
cufflinks 12.4895 0.0 32.6177    
cufflinks 35.4694 0.0 87.9086 High High

0 Strain