Gene : Eucgr.A01178 E. grandis v2.0
Defline:  (1 of 1) PTHR11254:SF350 - E3 UBIQUITIN-PROTEIN LIGASE UPL4 Genomic Order:  1075
Name:  ? Eucgr.A01178 Secondary Identifier:  ? PAC:32047010
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-7511 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01178 0.5kb upstream 0.5kb upstream 9195 true Chr01: 24470957-24480151 Eucalyptus grandis
Eucgr.A01178 0.5kb upstream 0.5kb upstream 500 false Chr01: 24470957-24471456 Eucalyptus grandis
Eucgr.A01178 0.5kb downstream 0.5kb downstream 9195 true Chr01: 24471457-24480651 Eucalyptus grandis
Eucgr.A01178 0.5kb downstream 0.5kb downstream 500 false Chr01: 24480152-24480651 Eucalyptus grandis
Eucgr.A01178 1.0kb upstream 1.0kb upstream 9695 true Chr01: 24470457-24480151 Eucalyptus grandis
Eucgr.A01178 1.0kb upstream 1.0kb upstream 1000 false Chr01: 24470457-24471456 Eucalyptus grandis
Eucgr.A01178 1.0kb downstream 1.0kb downstream 9695 true Chr01: 24471457-24481151 Eucalyptus grandis
Eucgr.A01178 1.0kb downstream 1.0kb downstream 1000 false Chr01: 24480152-24481151 Eucalyptus grandis
Eucgr.A01178 2.0kb upstream 2.0kb upstream 10695 true Chr01: 24469457-24480151 Eucalyptus grandis
Eucgr.A01178 2.0kb upstream 2.0kb upstream 2000 false Chr01: 24469457-24471456 Eucalyptus grandis
Eucgr.A01178 2.0kb downstream 2.0kb downstream 10695 true Chr01: 24471457-24482151 Eucalyptus grandis
Eucgr.A01178 2.0kb downstream 2.0kb downstream 2000 false Chr01: 24480152-24482151 Eucalyptus grandis
Eucgr.A01178 5.0kb upstream 5.0kb upstream 13695 true Chr01: 24466457-24480151 Eucalyptus grandis
Eucgr.A01178 5.0kb upstream 5.0kb upstream 5000 false Chr01: 24466457-24471456 Eucalyptus grandis
Eucgr.A01178 5.0kb downstream 5.0kb downstream 13695 true Chr01: 24471457-24485151 Eucalyptus grandis
Eucgr.A01178 5.0kb downstream 5.0kb downstream 5000 false Chr01: 24480152-24485151 Eucalyptus grandis
Eucgr.A01178 10.0kb upstream 10.0kb upstream 18695 true Chr01: 24461457-24480151 Eucalyptus grandis
Eucgr.A01178 10.0kb upstream 10.0kb upstream 10000 false Chr01: 24461457-24471456 Eucalyptus grandis
Eucgr.A01178 10.0kb downstream 10.0kb downstream 18695 true Chr01: 24471457-24490151 Eucalyptus grandis
Eucgr.A01178 10.0kb downstream 10.0kb downstream 10000 false Chr01: 24480152-24490151 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066546 5270 Rosid View MSA
123736938 5271 Pentapetalae View MSA
122796953 5272 Eudicot View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.47415 0.0 25.3176    
cufflinks 8.63379 0.0 20.5902    
cufflinks 8.93816 0.0 22.0847    
cufflinks 7.35843 0.0 19.0063    
cufflinks 4.94975 0.0 12.2325   Low
cufflinks 13.2429 0.0 30.0193   High

0 Strain