Gene : Eucgr.A01062 E. grandis v2.0
Defline:  (1 of 6) 6.1.1.3 - Threonine--tRNA ligase / Threonyl-tRNA synthetase Genomic Order:  1473
Name:  ? Eucgr.A01062 Secondary Identifier:  ? PAC:32049178
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01062 0.5kb upstream 0.5kb upstream 3499 true Chr01: 30804218-30807716 Eucalyptus grandis
Eucgr.A01062 0.5kb upstream 0.5kb upstream 500 false Chr01: 30804218-30804717 Eucalyptus grandis
Eucgr.A01062 0.5kb downstream 0.5kb downstream 3499 true Chr01: 30804718-30808216 Eucalyptus grandis
Eucgr.A01062 0.5kb downstream 0.5kb downstream 500 false Chr01: 30807717-30808216 Eucalyptus grandis
Eucgr.A01062 1.0kb upstream 1.0kb upstream 3999 true Chr01: 30803718-30807716 Eucalyptus grandis
Eucgr.A01062 1.0kb upstream 1.0kb upstream 1000 false Chr01: 30803718-30804717 Eucalyptus grandis
Eucgr.A01062 1.0kb downstream 1.0kb downstream 3999 true Chr01: 30804718-30808716 Eucalyptus grandis
Eucgr.A01062 1.0kb downstream 1.0kb downstream 1000 false Chr01: 30807717-30808716 Eucalyptus grandis
Eucgr.A01062 2.0kb upstream 2.0kb upstream 4999 true Chr01: 30802718-30807716 Eucalyptus grandis
Eucgr.A01062 2.0kb upstream 2.0kb upstream 2000 false Chr01: 30802718-30804717 Eucalyptus grandis
Eucgr.A01062 2.0kb downstream 2.0kb downstream 4999 true Chr01: 30804718-30809716 Eucalyptus grandis
Eucgr.A01062 2.0kb downstream 2.0kb downstream 2000 false Chr01: 30807717-30809716 Eucalyptus grandis
Eucgr.A01062 5.0kb upstream 5.0kb upstream 7999 true Chr01: 30799718-30807716 Eucalyptus grandis
Eucgr.A01062 5.0kb upstream 5.0kb upstream 5000 false Chr01: 30799718-30804717 Eucalyptus grandis
Eucgr.A01062 5.0kb downstream 5.0kb downstream 7999 true Chr01: 30804718-30812716 Eucalyptus grandis
Eucgr.A01062 5.0kb downstream 5.0kb downstream 5000 false Chr01: 30807717-30812716 Eucalyptus grandis
Eucgr.A01062 10.0kb upstream 10.0kb upstream 12999 true Chr01: 30794718-30807716 Eucalyptus grandis
Eucgr.A01062 10.0kb upstream 10.0kb upstream 10000 false Chr01: 30794718-30804717 Eucalyptus grandis
Eucgr.A01062 10.0kb downstream 10.0kb downstream 12999 true Chr01: 30804718-30817716 Eucalyptus grandis
Eucgr.A01062 10.0kb downstream 10.0kb downstream 10000 false Chr01: 30807717-30817716 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062778 5270 Rosid View MSA
123739350 5271 Pentapetalae View MSA
122793542 5272 Eudicot View MSA
122044606 5273 Angiosperm View MSA
121343894 5274 Embryophyte View MSA
123425201 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.4765 0.0 11.2017    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.60032 0.0 9.19255    
cufflinks 0.00374225 0.0 0.0595939 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 16.6069 0.0 37.2347    

0 Strain