Gene : Eucgr.A01048 E. grandis v2.0
Defline:  (1 of 1) PTHR13405:SF11 - NUCLEAR PORE COMPLEX PROTEIN NUP133 Genomic Order:  1461
Name:  ? Eucgr.A01048 Secondary Identifier:  ? PAC:32047492
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01048 0.5kb upstream 0.5kb upstream 8277 true Chr01: 30718843-30727119 Eucalyptus grandis
Eucgr.A01048 0.5kb upstream 0.5kb upstream 500 false Chr01: 30726620-30727119 Eucalyptus grandis
Eucgr.A01048 0.5kb downstream 0.5kb downstream 8277 true Chr01: 30718343-30726619 Eucalyptus grandis
Eucgr.A01048 0.5kb downstream 0.5kb downstream 500 false Chr01: 30718343-30718842 Eucalyptus grandis
Eucgr.A01048 1.0kb upstream 1.0kb upstream 8777 true Chr01: 30718843-30727619 Eucalyptus grandis
Eucgr.A01048 1.0kb upstream 1.0kb upstream 1000 false Chr01: 30726620-30727619 Eucalyptus grandis
Eucgr.A01048 1.0kb downstream 1.0kb downstream 8777 true Chr01: 30717843-30726619 Eucalyptus grandis
Eucgr.A01048 1.0kb downstream 1.0kb downstream 1000 false Chr01: 30717843-30718842 Eucalyptus grandis
Eucgr.A01048 2.0kb upstream 2.0kb upstream 9777 true Chr01: 30718843-30728619 Eucalyptus grandis
Eucgr.A01048 2.0kb upstream 2.0kb upstream 2000 false Chr01: 30726620-30728619 Eucalyptus grandis
Eucgr.A01048 2.0kb downstream 2.0kb downstream 9777 true Chr01: 30716843-30726619 Eucalyptus grandis
Eucgr.A01048 2.0kb downstream 2.0kb downstream 2000 false Chr01: 30716843-30718842 Eucalyptus grandis
Eucgr.A01048 5.0kb upstream 5.0kb upstream 12777 true Chr01: 30718843-30731619 Eucalyptus grandis
Eucgr.A01048 5.0kb upstream 5.0kb upstream 5000 false Chr01: 30726620-30731619 Eucalyptus grandis
Eucgr.A01048 5.0kb downstream 5.0kb downstream 12777 true Chr01: 30713843-30726619 Eucalyptus grandis
Eucgr.A01048 5.0kb downstream 5.0kb downstream 5000 false Chr01: 30713843-30718842 Eucalyptus grandis
Eucgr.A01048 10.0kb upstream 10.0kb upstream 17777 true Chr01: 30718843-30736619 Eucalyptus grandis
Eucgr.A01048 10.0kb upstream 10.0kb upstream 10000 false Chr01: 30726620-30736619 Eucalyptus grandis
Eucgr.A01048 10.0kb downstream 10.0kb downstream 17777 true Chr01: 30708843-30726619 Eucalyptus grandis
Eucgr.A01048 10.0kb downstream 10.0kb downstream 10000 false Chr01: 30708843-30718842 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065950 5270 Rosid View MSA
123739362 5271 Pentapetalae View MSA
122792648 5272 Eudicot View MSA
122045150 5273 Angiosperm View MSA
121345241 5274 Embryophyte View MSA
123424593 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.04948 0.0 7.10527   High
cufflinks 0.53103 0.0 1.46029 Low Low
cufflinks 2.34825 0.0 5.576    
cufflinks 0.870625 0.0 2.27337    
cufflinks 0.830093 0.0 2.18753    
cufflinks 2.65212 0.0 6.28147    

0 Strain