Gene : Eucgr.A00956 E. grandis v2.0
Defline:  (1 of 3) 6.1.1.1 - Tyrosine--tRNA ligase / Tyrosyl-tRNA synthetase Genomic Order:  492
Name:  ? Eucgr.A00956 Secondary Identifier:  ? PAC:32046642
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00956 0.5kb upstream 0.5kb upstream 4495 true Chr01: 10469230-10473724 Eucalyptus grandis
Eucgr.A00956 0.5kb upstream 0.5kb upstream 500 false Chr01: 10469230-10469729 Eucalyptus grandis
Eucgr.A00956 0.5kb downstream 0.5kb downstream 4495 true Chr01: 10469730-10474224 Eucalyptus grandis
Eucgr.A00956 0.5kb downstream 0.5kb downstream 500 false Chr01: 10473725-10474224 Eucalyptus grandis
Eucgr.A00956 1.0kb upstream 1.0kb upstream 4995 true Chr01: 10468730-10473724 Eucalyptus grandis
Eucgr.A00956 1.0kb upstream 1.0kb upstream 1000 false Chr01: 10468730-10469729 Eucalyptus grandis
Eucgr.A00956 1.0kb downstream 1.0kb downstream 4995 true Chr01: 10469730-10474724 Eucalyptus grandis
Eucgr.A00956 1.0kb downstream 1.0kb downstream 1000 false Chr01: 10473725-10474724 Eucalyptus grandis
Eucgr.A00956 2.0kb upstream 2.0kb upstream 5995 true Chr01: 10467730-10473724 Eucalyptus grandis
Eucgr.A00956 2.0kb upstream 2.0kb upstream 2000 false Chr01: 10467730-10469729 Eucalyptus grandis
Eucgr.A00956 2.0kb downstream 2.0kb downstream 5995 true Chr01: 10469730-10475724 Eucalyptus grandis
Eucgr.A00956 2.0kb downstream 2.0kb downstream 2000 false Chr01: 10473725-10475724 Eucalyptus grandis
Eucgr.A00956 5.0kb upstream 5.0kb upstream 8995 true Chr01: 10464730-10473724 Eucalyptus grandis
Eucgr.A00956 5.0kb upstream 5.0kb upstream 5000 false Chr01: 10464730-10469729 Eucalyptus grandis
Eucgr.A00956 5.0kb downstream 5.0kb downstream 8995 true Chr01: 10469730-10478724 Eucalyptus grandis
Eucgr.A00956 5.0kb downstream 5.0kb downstream 5000 false Chr01: 10473725-10478724 Eucalyptus grandis
Eucgr.A00956 10.0kb upstream 10.0kb upstream 13995 true Chr01: 10459730-10473724 Eucalyptus grandis
Eucgr.A00956 10.0kb upstream 10.0kb upstream 10000 false Chr01: 10459730-10469729 Eucalyptus grandis
Eucgr.A00956 10.0kb downstream 10.0kb downstream 13995 true Chr01: 10469730-10483724 Eucalyptus grandis
Eucgr.A00956 10.0kb downstream 10.0kb downstream 10000 false Chr01: 10473725-10483724 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041140 5273 Angiosperm View MSA
124067853 5270 Rosid View MSA
123747436 5271 Pentapetalae View MSA
122790144 5272 Eudicot View MSA
121344192 5274 Embryophyte View MSA
123424631 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.965 0.0 41.0077   High
cufflinks 13.4801 0.0 31.2098    
cufflinks 17.1891 0.0 48.5599    
cufflinks 13.963 0.0 36.0444    
cufflinks 9.61608 0.0 22.1398   Low
cufflinks 13.6891 0.0 38.9714    

0 Strain