Gene : Eucgr.A01602 E. grandis v2.0
Defline:  (1 of 1) KOG0978//KOG0993 - E3 ubiquitin ligase involved in syntaxin degradation // Rab5 GTPase effector Rabaptin-5 Genomic Order:  1188
Name:  ? Eucgr.A01602 Secondary Identifier:  ? PAC:32046628
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01602 0.5kb upstream 0.5kb upstream 4506 true Chr01: 26897179-26901684 Eucalyptus grandis
Eucgr.A01602 0.5kb upstream 0.5kb upstream 500 false Chr01: 26901185-26901684 Eucalyptus grandis
Eucgr.A01602 0.5kb downstream 0.5kb downstream 4506 true Chr01: 26896679-26901184 Eucalyptus grandis
Eucgr.A01602 0.5kb downstream 0.5kb downstream 500 false Chr01: 26896679-26897178 Eucalyptus grandis
Eucgr.A01602 1.0kb upstream 1.0kb upstream 5006 true Chr01: 26897179-26902184 Eucalyptus grandis
Eucgr.A01602 1.0kb upstream 1.0kb upstream 1000 false Chr01: 26901185-26902184 Eucalyptus grandis
Eucgr.A01602 1.0kb downstream 1.0kb downstream 5006 true Chr01: 26896179-26901184 Eucalyptus grandis
Eucgr.A01602 1.0kb downstream 1.0kb downstream 1000 false Chr01: 26896179-26897178 Eucalyptus grandis
Eucgr.A01602 2.0kb upstream 2.0kb upstream 6006 true Chr01: 26897179-26903184 Eucalyptus grandis
Eucgr.A01602 2.0kb upstream 2.0kb upstream 2000 false Chr01: 26901185-26903184 Eucalyptus grandis
Eucgr.A01602 2.0kb downstream 2.0kb downstream 6006 true Chr01: 26895179-26901184 Eucalyptus grandis
Eucgr.A01602 2.0kb downstream 2.0kb downstream 2000 false Chr01: 26895179-26897178 Eucalyptus grandis
Eucgr.A01602 5.0kb upstream 5.0kb upstream 9006 true Chr01: 26897179-26906184 Eucalyptus grandis
Eucgr.A01602 5.0kb upstream 5.0kb upstream 5000 false Chr01: 26901185-26906184 Eucalyptus grandis
Eucgr.A01602 5.0kb downstream 5.0kb downstream 9006 true Chr01: 26892179-26901184 Eucalyptus grandis
Eucgr.A01602 5.0kb downstream 5.0kb downstream 5000 false Chr01: 26892179-26897178 Eucalyptus grandis
Eucgr.A01602 10.0kb upstream 10.0kb upstream 14006 true Chr01: 26897179-26911184 Eucalyptus grandis
Eucgr.A01602 10.0kb upstream 10.0kb upstream 10000 false Chr01: 26901185-26911184 Eucalyptus grandis
Eucgr.A01602 10.0kb downstream 10.0kb downstream 14006 true Chr01: 26887179-26901184 Eucalyptus grandis
Eucgr.A01602 10.0kb downstream 10.0kb downstream 10000 false Chr01: 26887179-26897178 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124071958 5270 Rosid View MSA
123751263 5271 Pentapetalae View MSA
122794773 5272 Eudicot View MSA
122048313 5273 Angiosperm View MSA
121348283 5274 Embryophyte View MSA
123428094 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 49.6993 0.0 118.103 High High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0682572 0.0 0.242389 Low Low
cufflinks 18.6961 0.0 41.7366    
cufflinks 1.39792 0.0 3.52613    
cufflinks 1.44785 0.0 3.67306    

0 Strain