Gene : Eucgr.A01573 E. grandis v2.0
Defline:  (1 of 1) KOG3473 - RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C Genomic Order:  1215
Name:  ? Eucgr.A01573 Secondary Identifier:  ? PAC:32047141
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01573 0.5kb upstream 0.5kb upstream 4164 true Chr01: 27406624-27410787 Eucalyptus grandis
Eucgr.A01573 0.5kb upstream 0.5kb upstream 500 false Chr01: 27406624-27407123 Eucalyptus grandis
Eucgr.A01573 0.5kb downstream 0.5kb downstream 4164 true Chr01: 27407124-27411287 Eucalyptus grandis
Eucgr.A01573 0.5kb downstream 0.5kb downstream 500 false Chr01: 27410788-27411287 Eucalyptus grandis
Eucgr.A01573 1.0kb upstream 1.0kb upstream 4664 true Chr01: 27406124-27410787 Eucalyptus grandis
Eucgr.A01573 1.0kb upstream 1.0kb upstream 1000 false Chr01: 27406124-27407123 Eucalyptus grandis
Eucgr.A01573 1.0kb downstream 1.0kb downstream 4664 true Chr01: 27407124-27411787 Eucalyptus grandis
Eucgr.A01573 1.0kb downstream 1.0kb downstream 1000 false Chr01: 27410788-27411787 Eucalyptus grandis
Eucgr.A01573 2.0kb upstream 2.0kb upstream 5664 true Chr01: 27405124-27410787 Eucalyptus grandis
Eucgr.A01573 2.0kb upstream 2.0kb upstream 2000 false Chr01: 27405124-27407123 Eucalyptus grandis
Eucgr.A01573 2.0kb downstream 2.0kb downstream 5664 true Chr01: 27407124-27412787 Eucalyptus grandis
Eucgr.A01573 2.0kb downstream 2.0kb downstream 2000 false Chr01: 27410788-27412787 Eucalyptus grandis
Eucgr.A01573 5.0kb upstream 5.0kb upstream 8664 true Chr01: 27402124-27410787 Eucalyptus grandis
Eucgr.A01573 5.0kb upstream 5.0kb upstream 5000 false Chr01: 27402124-27407123 Eucalyptus grandis
Eucgr.A01573 5.0kb downstream 5.0kb downstream 8664 true Chr01: 27407124-27415787 Eucalyptus grandis
Eucgr.A01573 5.0kb downstream 5.0kb downstream 5000 false Chr01: 27410788-27415787 Eucalyptus grandis
Eucgr.A01573 10.0kb upstream 10.0kb upstream 13664 true Chr01: 27397124-27410787 Eucalyptus grandis
Eucgr.A01573 10.0kb upstream 10.0kb upstream 10000 false Chr01: 27397124-27407123 Eucalyptus grandis
Eucgr.A01573 10.0kb downstream 10.0kb downstream 13664 true Chr01: 27407124-27420787 Eucalyptus grandis
Eucgr.A01573 10.0kb downstream 10.0kb downstream 10000 false Chr01: 27410788-27420787 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041156 5273 Angiosperm View MSA
124050282 5270 Rosid View MSA
123619787 5271 Pentapetalae View MSA
122654223 5272 Eudicot View MSA
121349324 5274 Embryophyte View MSA
123423889 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 111.095 0.0 246.061 High  
cufflinks 90.6638 0.0 200.5 High  
cufflinks 105.641 0.0 233.776 High  
cufflinks 147.869 0.0 329.515 High High
cufflinks 147.522 0.0 328.609 High High
cufflinks 71.5069 0.0 158.292 High Low

0 Strain