Gene : Eucgr.A01588 E. grandis v2.0
Defline:  (1 of 2) 4.3.1.19 - Threonine ammonia-lyase / Threonine dehydratase Genomic Order:  1201
Name:  ? Eucgr.A01588 Secondary Identifier:  ? PAC:32045968
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis BRANCHED-CHAIN-AA-SYN-PWY Eucalyptus grandis pathologic  
Egrandis ILEUSYN-PWY Eucalyptus grandis pathologic  
Egrandis PWY-3001 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01588 0.5kb upstream 0.5kb upstream 8632 true Chr01: 27198022-27206653 Eucalyptus grandis
Eucgr.A01588 0.5kb upstream 0.5kb upstream 500 false Chr01: 27198022-27198521 Eucalyptus grandis
Eucgr.A01588 0.5kb downstream 0.5kb downstream 8632 true Chr01: 27198522-27207153 Eucalyptus grandis
Eucgr.A01588 0.5kb downstream 0.5kb downstream 500 false Chr01: 27206654-27207153 Eucalyptus grandis
Eucgr.A01588 1.0kb upstream 1.0kb upstream 9132 true Chr01: 27197522-27206653 Eucalyptus grandis
Eucgr.A01588 1.0kb upstream 1.0kb upstream 1000 false Chr01: 27197522-27198521 Eucalyptus grandis
Eucgr.A01588 1.0kb downstream 1.0kb downstream 9132 true Chr01: 27198522-27207653 Eucalyptus grandis
Eucgr.A01588 1.0kb downstream 1.0kb downstream 1000 false Chr01: 27206654-27207653 Eucalyptus grandis
Eucgr.A01588 2.0kb upstream 2.0kb upstream 10132 true Chr01: 27196522-27206653 Eucalyptus grandis
Eucgr.A01588 2.0kb upstream 2.0kb upstream 2000 false Chr01: 27196522-27198521 Eucalyptus grandis
Eucgr.A01588 2.0kb downstream 2.0kb downstream 10132 true Chr01: 27198522-27208653 Eucalyptus grandis
Eucgr.A01588 2.0kb downstream 2.0kb downstream 2000 false Chr01: 27206654-27208653 Eucalyptus grandis
Eucgr.A01588 5.0kb upstream 5.0kb upstream 13132 true Chr01: 27193522-27206653 Eucalyptus grandis
Eucgr.A01588 5.0kb upstream 5.0kb upstream 5000 false Chr01: 27193522-27198521 Eucalyptus grandis
Eucgr.A01588 5.0kb downstream 5.0kb downstream 13132 true Chr01: 27198522-27211653 Eucalyptus grandis
Eucgr.A01588 5.0kb downstream 5.0kb downstream 5000 false Chr01: 27206654-27211653 Eucalyptus grandis
Eucgr.A01588 10.0kb upstream 10.0kb upstream 18132 true Chr01: 27188522-27206653 Eucalyptus grandis
Eucgr.A01588 10.0kb upstream 10.0kb upstream 10000 false Chr01: 27188522-27198521 Eucalyptus grandis
Eucgr.A01588 10.0kb downstream 10.0kb downstream 18132 true Chr01: 27198522-27216653 Eucalyptus grandis
Eucgr.A01588 10.0kb downstream 10.0kb downstream 10000 false Chr01: 27206654-27216653 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040897 5273 Angiosperm View MSA
124062087 5270 Rosid View MSA
123737037 5271 Pentapetalae View MSA
122787691 5272 Eudicot View MSA
121344792 5274 Embryophyte View MSA
123427671 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.2886 0.0 99.3106 High High
cufflinks 8.40285 0.0 19.1312   Low
cufflinks 37.7251 0.0 84.1792 High  
cufflinks 11.0677 0.0 24.7988    
cufflinks 11.6234 0.0 26.0552    
cufflinks 27.1067 0.0 59.9791    

0 Strain