Gene : Eucgr.A01369 E. grandis v2.0
Defline:  (1 of 1) PTHR22904:SF312 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  455
Name:  ? Eucgr.A01369 Secondary Identifier:  ? PAC:32048070
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01369 0.5kb upstream 0.5kb upstream 5719 true Chr01: 9016017-9021735 Eucalyptus grandis
Eucgr.A01369 0.5kb upstream 0.5kb upstream 500 false Chr01: 9021236-9021735 Eucalyptus grandis
Eucgr.A01369 0.5kb downstream 0.5kb downstream 5719 true Chr01: 9015517-9021235 Eucalyptus grandis
Eucgr.A01369 0.5kb downstream 0.5kb downstream 500 false Chr01: 9015517-9016016 Eucalyptus grandis
Eucgr.A01369 1.0kb upstream 1.0kb upstream 6219 true Chr01: 9016017-9022235 Eucalyptus grandis
Eucgr.A01369 1.0kb upstream 1.0kb upstream 1000 false Chr01: 9021236-9022235 Eucalyptus grandis
Eucgr.A01369 1.0kb downstream 1.0kb downstream 6219 true Chr01: 9015017-9021235 Eucalyptus grandis
Eucgr.A01369 1.0kb downstream 1.0kb downstream 1000 false Chr01: 9015017-9016016 Eucalyptus grandis
Eucgr.A01369 2.0kb upstream 2.0kb upstream 7219 true Chr01: 9016017-9023235 Eucalyptus grandis
Eucgr.A01369 2.0kb upstream 2.0kb upstream 2000 false Chr01: 9021236-9023235 Eucalyptus grandis
Eucgr.A01369 2.0kb downstream 2.0kb downstream 7219 true Chr01: 9014017-9021235 Eucalyptus grandis
Eucgr.A01369 2.0kb downstream 2.0kb downstream 2000 false Chr01: 9014017-9016016 Eucalyptus grandis
Eucgr.A01369 5.0kb upstream 5.0kb upstream 10219 true Chr01: 9016017-9026235 Eucalyptus grandis
Eucgr.A01369 5.0kb upstream 5.0kb upstream 5000 false Chr01: 9021236-9026235 Eucalyptus grandis
Eucgr.A01369 5.0kb downstream 5.0kb downstream 10219 true Chr01: 9011017-9021235 Eucalyptus grandis
Eucgr.A01369 5.0kb downstream 5.0kb downstream 5000 false Chr01: 9011017-9016016 Eucalyptus grandis
Eucgr.A01369 10.0kb upstream 10.0kb upstream 15219 true Chr01: 9016017-9031235 Eucalyptus grandis
Eucgr.A01369 10.0kb upstream 10.0kb upstream 10000 false Chr01: 9021236-9031235 Eucalyptus grandis
Eucgr.A01369 10.0kb downstream 10.0kb downstream 15219 true Chr01: 9006017-9021235 Eucalyptus grandis
Eucgr.A01369 10.0kb downstream 10.0kb downstream 10000 false Chr01: 9006017-9016016 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068096 5270 Rosid View MSA
123752266 5271 Pentapetalae View MSA
122787898 5272 Eudicot View MSA
122046706 5273 Angiosperm View MSA
121343893 5274 Embryophyte View MSA
123425417 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.24394 0.0 10.6811    
cufflinks 9.85045 0.0 22.7838    
cufflinks 8.89632 0.0 20.7872    
cufflinks 11.7912 0.0 26.9018    
cufflinks 14.5304 0.0 32.8165    
cufflinks 2.26395 0.0 6.08453   Low

0 Strain