Gene : Eucgr.A01955 E. grandis v2.0
Defline:  (1 of 2) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  1759
Name:  ? Eucgr.A01955 Secondary Identifier:  ? PAC:32048621
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis GLYOXYLATE-BYPASS Eucalyptus grandis pathologic  
Egrandis PWY-5464 Eucalyptus grandis pathologic  
Egrandis PWY-561 Eucalyptus grandis pathologic  
Egrandis PWY-5690 Eucalyptus grandis pathologic  
Egrandis PWY-6549 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01955 0.5kb upstream 0.5kb upstream 6290 true Chr01: 34937843-34944132 Eucalyptus grandis
Eucgr.A01955 0.5kb upstream 0.5kb upstream 500 false Chr01: 34943633-34944132 Eucalyptus grandis
Eucgr.A01955 0.5kb downstream 0.5kb downstream 6290 true Chr01: 34937343-34943632 Eucalyptus grandis
Eucgr.A01955 0.5kb downstream 0.5kb downstream 500 false Chr01: 34937343-34937842 Eucalyptus grandis
Eucgr.A01955 1.0kb upstream 1.0kb upstream 6790 true Chr01: 34937843-34944632 Eucalyptus grandis
Eucgr.A01955 1.0kb upstream 1.0kb upstream 1000 false Chr01: 34943633-34944632 Eucalyptus grandis
Eucgr.A01955 1.0kb downstream 1.0kb downstream 6790 true Chr01: 34936843-34943632 Eucalyptus grandis
Eucgr.A01955 1.0kb downstream 1.0kb downstream 1000 false Chr01: 34936843-34937842 Eucalyptus grandis
Eucgr.A01955 2.0kb upstream 2.0kb upstream 7790 true Chr01: 34937843-34945632 Eucalyptus grandis
Eucgr.A01955 2.0kb upstream 2.0kb upstream 2000 false Chr01: 34943633-34945632 Eucalyptus grandis
Eucgr.A01955 2.0kb downstream 2.0kb downstream 7790 true Chr01: 34935843-34943632 Eucalyptus grandis
Eucgr.A01955 2.0kb downstream 2.0kb downstream 2000 false Chr01: 34935843-34937842 Eucalyptus grandis
Eucgr.A01955 5.0kb upstream 5.0kb upstream 10790 true Chr01: 34937843-34948632 Eucalyptus grandis
Eucgr.A01955 5.0kb upstream 5.0kb upstream 5000 false Chr01: 34943633-34948632 Eucalyptus grandis
Eucgr.A01955 5.0kb downstream 5.0kb downstream 10790 true Chr01: 34932843-34943632 Eucalyptus grandis
Eucgr.A01955 5.0kb downstream 5.0kb downstream 5000 false Chr01: 34932843-34937842 Eucalyptus grandis
Eucgr.A01955 10.0kb upstream 10.0kb upstream 15790 true Chr01: 34937843-34953632 Eucalyptus grandis
Eucgr.A01955 10.0kb upstream 10.0kb upstream 10000 false Chr01: 34943633-34953632 Eucalyptus grandis
Eucgr.A01955 10.0kb downstream 10.0kb downstream 15790 true Chr01: 34927843-34943632 Eucalyptus grandis
Eucgr.A01955 10.0kb downstream 10.0kb downstream 10000 false Chr01: 34927843-34937842 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065792 5270 Rosid View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 101.936 0.0 319.648 High High
cufflinks 40.5918 0.0 102.352   Low
cufflinks 90.0473 0.0 240.574 High  
cufflinks 63.2439 0.0 189.088 High  
cufflinks 49.73 0.0 129.09 High  
cufflinks 79.829 0.0 244.853 High  

0 Strain