Gene : Eucgr.A01916 E. grandis v2.0
Defline:  (1 of 2) PTHR31165:SF10 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Genomic Order:  1725
Name:  ? Eucgr.A01916 Secondary Identifier:  ? PAC:32046875
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01916 0.5kb upstream 0.5kb upstream 4646 true Chr01: 34486598-34491243 Eucalyptus grandis
Eucgr.A01916 0.5kb upstream 0.5kb upstream 500 false Chr01: 34486598-34487097 Eucalyptus grandis
Eucgr.A01916 0.5kb downstream 0.5kb downstream 4646 true Chr01: 34487098-34491743 Eucalyptus grandis
Eucgr.A01916 0.5kb downstream 0.5kb downstream 500 false Chr01: 34491244-34491743 Eucalyptus grandis
Eucgr.A01916 1.0kb upstream 1.0kb upstream 5146 true Chr01: 34486098-34491243 Eucalyptus grandis
Eucgr.A01916 1.0kb upstream 1.0kb upstream 1000 false Chr01: 34486098-34487097 Eucalyptus grandis
Eucgr.A01916 1.0kb downstream 1.0kb downstream 5146 true Chr01: 34487098-34492243 Eucalyptus grandis
Eucgr.A01916 1.0kb downstream 1.0kb downstream 1000 false Chr01: 34491244-34492243 Eucalyptus grandis
Eucgr.A01916 2.0kb upstream 2.0kb upstream 6146 true Chr01: 34485098-34491243 Eucalyptus grandis
Eucgr.A01916 2.0kb upstream 2.0kb upstream 2000 false Chr01: 34485098-34487097 Eucalyptus grandis
Eucgr.A01916 2.0kb downstream 2.0kb downstream 6146 true Chr01: 34487098-34493243 Eucalyptus grandis
Eucgr.A01916 2.0kb downstream 2.0kb downstream 2000 false Chr01: 34491244-34493243 Eucalyptus grandis
Eucgr.A01916 5.0kb upstream 5.0kb upstream 9146 true Chr01: 34482098-34491243 Eucalyptus grandis
Eucgr.A01916 5.0kb upstream 5.0kb upstream 5000 false Chr01: 34482098-34487097 Eucalyptus grandis
Eucgr.A01916 5.0kb downstream 5.0kb downstream 9146 true Chr01: 34487098-34496243 Eucalyptus grandis
Eucgr.A01916 5.0kb downstream 5.0kb downstream 5000 false Chr01: 34491244-34496243 Eucalyptus grandis
Eucgr.A01916 10.0kb upstream 10.0kb upstream 14146 true Chr01: 34477098-34491243 Eucalyptus grandis
Eucgr.A01916 10.0kb upstream 10.0kb upstream 10000 false Chr01: 34477098-34487097 Eucalyptus grandis
Eucgr.A01916 10.0kb downstream 10.0kb downstream 14146 true Chr01: 34487098-34501243 Eucalyptus grandis
Eucgr.A01916 10.0kb downstream 10.0kb downstream 10000 false Chr01: 34491244-34501243 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792183 5273 Angiosperm View MSA
124064953 5270 Rosid View MSA
123750207 5271 Pentapetalae View MSA
122796804 5272 Eudicot View MSA
121063429 5274 Embryophyte View MSA
123103178 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.489574 0.0 1.85822 Low Low
cufflinks 17.2703 0.0 40.0857   High
cufflinks 2.62216 0.0 7.88237    
cufflinks 1.17899 0.0 3.93055    
cufflinks 6.33188 0.0 16.8924    
cufflinks 0.734915 0.0 2.73217 Low  

0 Strain