Gene : Eucgr.A02520 E. grandis v2.0
Defline:  (1 of 1) PTHR24015:SF644 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Genomic Order:  2259
Name:  ? Eucgr.A02520 Secondary Identifier:  ? PAC:32048509
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A02520 0.5kb upstream 0.5kb upstream 3746 true Chr01: 40503791-40507536 Eucalyptus grandis
Eucgr.A02520 0.5kb upstream 0.5kb upstream 500 false Chr01: 40503791-40504290 Eucalyptus grandis
Eucgr.A02520 0.5kb downstream 0.5kb downstream 3746 true Chr01: 40504291-40508036 Eucalyptus grandis
Eucgr.A02520 0.5kb downstream 0.5kb downstream 500 false Chr01: 40507537-40508036 Eucalyptus grandis
Eucgr.A02520 1.0kb upstream 1.0kb upstream 4246 true Chr01: 40503291-40507536 Eucalyptus grandis
Eucgr.A02520 1.0kb upstream 1.0kb upstream 1000 false Chr01: 40503291-40504290 Eucalyptus grandis
Eucgr.A02520 1.0kb downstream 1.0kb downstream 4246 true Chr01: 40504291-40508536 Eucalyptus grandis
Eucgr.A02520 1.0kb downstream 1.0kb downstream 1000 false Chr01: 40507537-40508536 Eucalyptus grandis
Eucgr.A02520 2.0kb upstream 2.0kb upstream 5246 true Chr01: 40502291-40507536 Eucalyptus grandis
Eucgr.A02520 2.0kb upstream 2.0kb upstream 2000 false Chr01: 40502291-40504290 Eucalyptus grandis
Eucgr.A02520 2.0kb downstream 2.0kb downstream 5246 true Chr01: 40504291-40509536 Eucalyptus grandis
Eucgr.A02520 2.0kb downstream 2.0kb downstream 2000 false Chr01: 40507537-40509536 Eucalyptus grandis
Eucgr.A02520 5.0kb upstream 5.0kb upstream 8246 true Chr01: 40499291-40507536 Eucalyptus grandis
Eucgr.A02520 5.0kb upstream 5.0kb upstream 5000 false Chr01: 40499291-40504290 Eucalyptus grandis
Eucgr.A02520 5.0kb downstream 5.0kb downstream 8246 true Chr01: 40504291-40512536 Eucalyptus grandis
Eucgr.A02520 5.0kb downstream 5.0kb downstream 5000 false Chr01: 40507537-40512536 Eucalyptus grandis
Eucgr.A02520 10.0kb upstream 10.0kb upstream 13246 true Chr01: 40494291-40507536 Eucalyptus grandis
Eucgr.A02520 10.0kb upstream 10.0kb upstream 10000 false Chr01: 40494291-40504290 Eucalyptus grandis
Eucgr.A02520 10.0kb downstream 10.0kb downstream 13246 true Chr01: 40504291-40517536 Eucalyptus grandis
Eucgr.A02520 10.0kb downstream 10.0kb downstream 10000 false Chr01: 40507537-40517536 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124071698 5270 Rosid View MSA
123743334 5271 Pentapetalae View MSA
122796848 5272 Eudicot View MSA
122049142 5273 Angiosperm View MSA
121311265 5274 Embryophyte View MSA
123348580 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.03494 0.0 5.52121   High
cufflinks 2.08332 0.0 5.60349   High
cufflinks 0.740908 0.0 2.22404   Low
cufflinks 1.24268 0.0 3.50919    
cufflinks 1.17908 0.0 3.37111    
cufflinks 1.42645 0.0 4.0365    

0 Strain