Gene : Eucgr.A02227 E. grandis v2.0
Defline:  (1 of 2) 4.1.3.4 - Hydroxymethylglutaryl-CoA lyase / HMG-CoA lyase Genomic Order:  1997
Name:  ? Eucgr.A02227 Secondary Identifier:  ? PAC:32048559
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis LEU-DEG2-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A02227 0.5kb upstream 0.5kb upstream 6886 true Chr01: 37677760-37684645 Eucalyptus grandis
Eucgr.A02227 0.5kb upstream 0.5kb upstream 500 false Chr01: 37684146-37684645 Eucalyptus grandis
Eucgr.A02227 0.5kb downstream 0.5kb downstream 6886 true Chr01: 37677260-37684145 Eucalyptus grandis
Eucgr.A02227 0.5kb downstream 0.5kb downstream 500 false Chr01: 37677260-37677759 Eucalyptus grandis
Eucgr.A02227 1.0kb upstream 1.0kb upstream 7386 true Chr01: 37677760-37685145 Eucalyptus grandis
Eucgr.A02227 1.0kb upstream 1.0kb upstream 1000 false Chr01: 37684146-37685145 Eucalyptus grandis
Eucgr.A02227 1.0kb downstream 1.0kb downstream 7386 true Chr01: 37676760-37684145 Eucalyptus grandis
Eucgr.A02227 1.0kb downstream 1.0kb downstream 1000 false Chr01: 37676760-37677759 Eucalyptus grandis
Eucgr.A02227 2.0kb upstream 2.0kb upstream 8386 true Chr01: 37677760-37686145 Eucalyptus grandis
Eucgr.A02227 2.0kb upstream 2.0kb upstream 2000 false Chr01: 37684146-37686145 Eucalyptus grandis
Eucgr.A02227 2.0kb downstream 2.0kb downstream 8386 true Chr01: 37675760-37684145 Eucalyptus grandis
Eucgr.A02227 2.0kb downstream 2.0kb downstream 2000 false Chr01: 37675760-37677759 Eucalyptus grandis
Eucgr.A02227 5.0kb upstream 5.0kb upstream 11386 true Chr01: 37677760-37689145 Eucalyptus grandis
Eucgr.A02227 5.0kb upstream 5.0kb upstream 5000 false Chr01: 37684146-37689145 Eucalyptus grandis
Eucgr.A02227 5.0kb downstream 5.0kb downstream 11386 true Chr01: 37672760-37684145 Eucalyptus grandis
Eucgr.A02227 5.0kb downstream 5.0kb downstream 5000 false Chr01: 37672760-37677759 Eucalyptus grandis
Eucgr.A02227 10.0kb upstream 10.0kb upstream 16386 true Chr01: 37677760-37694145 Eucalyptus grandis
Eucgr.A02227 10.0kb upstream 10.0kb upstream 10000 false Chr01: 37684146-37694145 Eucalyptus grandis
Eucgr.A02227 10.0kb downstream 10.0kb downstream 16386 true Chr01: 37667760-37684145 Eucalyptus grandis
Eucgr.A02227 10.0kb downstream 10.0kb downstream 10000 false Chr01: 37667760-37677759 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124074648 5270 Rosid View MSA
123743387 5271 Pentapetalae View MSA
122790168 5272 Eudicot View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.2533 0.0 27.7532    
cufflinks 10.8841 0.0 25.2081    
cufflinks 7.54678 0.0 19.068   Low
cufflinks 9.70489 0.0 22.5999    
cufflinks 7.81207 0.0 17.9584    
cufflinks 14.1104 0.0 32.2162   High

0 Strain