Gene : Eucgr.A02846 E. grandis v2.0
Defline:  (1 of 15) PTHR11945:SF208 - MADS-BOX PROTEIN SOC1 Genomic Order:  2557
Name:  ? Eucgr.A02846 Secondary Identifier:  ? PAC:32046275
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A02846 0.5kb upstream 0.5kb upstream 10832 true Chr01: 43525610-43536441 Eucalyptus grandis
Eucgr.A02846 0.5kb upstream 0.5kb upstream 500 false Chr01: 43525610-43526109 Eucalyptus grandis
Eucgr.A02846 0.5kb downstream 0.5kb downstream 10832 true Chr01: 43526110-43536941 Eucalyptus grandis
Eucgr.A02846 0.5kb downstream 0.5kb downstream 500 false Chr01: 43536442-43536941 Eucalyptus grandis
Eucgr.A02846 1.0kb upstream 1.0kb upstream 11332 true Chr01: 43525110-43536441 Eucalyptus grandis
Eucgr.A02846 1.0kb upstream 1.0kb upstream 1000 false Chr01: 43525110-43526109 Eucalyptus grandis
Eucgr.A02846 1.0kb downstream 1.0kb downstream 11332 true Chr01: 43526110-43537441 Eucalyptus grandis
Eucgr.A02846 1.0kb downstream 1.0kb downstream 1000 false Chr01: 43536442-43537441 Eucalyptus grandis
Eucgr.A02846 2.0kb upstream 2.0kb upstream 12332 true Chr01: 43524110-43536441 Eucalyptus grandis
Eucgr.A02846 2.0kb upstream 2.0kb upstream 2000 false Chr01: 43524110-43526109 Eucalyptus grandis
Eucgr.A02846 2.0kb downstream 2.0kb downstream 12332 true Chr01: 43526110-43538441 Eucalyptus grandis
Eucgr.A02846 2.0kb downstream 2.0kb downstream 2000 false Chr01: 43536442-43538441 Eucalyptus grandis
Eucgr.A02846 5.0kb upstream 5.0kb upstream 15332 true Chr01: 43521110-43536441 Eucalyptus grandis
Eucgr.A02846 5.0kb upstream 5.0kb upstream 5000 false Chr01: 43521110-43526109 Eucalyptus grandis
Eucgr.A02846 5.0kb downstream 5.0kb downstream 15332 true Chr01: 43526110-43541441 Eucalyptus grandis
Eucgr.A02846 5.0kb downstream 5.0kb downstream 5000 false Chr01: 43536442-43541441 Eucalyptus grandis
Eucgr.A02846 10.0kb upstream 10.0kb upstream 20332 true Chr01: 43516110-43536441 Eucalyptus grandis
Eucgr.A02846 10.0kb upstream 10.0kb upstream 10000 false Chr01: 43516110-43526109 Eucalyptus grandis
Eucgr.A02846 10.0kb downstream 10.0kb downstream 20332 true Chr01: 43526110-43546441 Eucalyptus grandis
Eucgr.A02846 10.0kb downstream 10.0kb downstream 10000 false Chr01: 43536442-43546441 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073798 5270 Rosid View MSA
123750432 5271 Pentapetalae View MSA
122795311 5272 Eudicot View MSA
122042392 5273 Angiosperm View MSA
121309956 5274 Embryophyte View MSA
123347576 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.0956 0.0 42.422    
cufflinks 23.6394 0.0 63.5689    
cufflinks 13.7279 0.0 43.407    
cufflinks 16.2994 0.0 45.6703    
cufflinks 39.1091 0.0 101.765 High High
cufflinks 14.3685 0.0 39.1141    

0 Strain