Gene : Eucgr.A02720 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2439
Name:  ? Eucgr.A02720 Secondary Identifier:  ? PAC:32046086
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A02720 0.5kb upstream 0.5kb upstream 3556 true Chr01: 42483873-42487428 Eucalyptus grandis
Eucgr.A02720 0.5kb upstream 0.5kb upstream 500 false Chr01: 42486929-42487428 Eucalyptus grandis
Eucgr.A02720 0.5kb downstream 0.5kb downstream 3556 true Chr01: 42483373-42486928 Eucalyptus grandis
Eucgr.A02720 0.5kb downstream 0.5kb downstream 500 false Chr01: 42483373-42483872 Eucalyptus grandis
Eucgr.A02720 1.0kb upstream 1.0kb upstream 4056 true Chr01: 42483873-42487928 Eucalyptus grandis
Eucgr.A02720 1.0kb upstream 1.0kb upstream 1000 false Chr01: 42486929-42487928 Eucalyptus grandis
Eucgr.A02720 1.0kb downstream 1.0kb downstream 4056 true Chr01: 42482873-42486928 Eucalyptus grandis
Eucgr.A02720 1.0kb downstream 1.0kb downstream 1000 false Chr01: 42482873-42483872 Eucalyptus grandis
Eucgr.A02720 2.0kb upstream 2.0kb upstream 5056 true Chr01: 42483873-42488928 Eucalyptus grandis
Eucgr.A02720 2.0kb upstream 2.0kb upstream 2000 false Chr01: 42486929-42488928 Eucalyptus grandis
Eucgr.A02720 2.0kb downstream 2.0kb downstream 5056 true Chr01: 42481873-42486928 Eucalyptus grandis
Eucgr.A02720 2.0kb downstream 2.0kb downstream 2000 false Chr01: 42481873-42483872 Eucalyptus grandis
Eucgr.A02720 5.0kb upstream 5.0kb upstream 8056 true Chr01: 42483873-42491928 Eucalyptus grandis
Eucgr.A02720 5.0kb upstream 5.0kb upstream 5000 false Chr01: 42486929-42491928 Eucalyptus grandis
Eucgr.A02720 5.0kb downstream 5.0kb downstream 8056 true Chr01: 42478873-42486928 Eucalyptus grandis
Eucgr.A02720 5.0kb downstream 5.0kb downstream 5000 false Chr01: 42478873-42483872 Eucalyptus grandis
Eucgr.A02720 10.0kb upstream 10.0kb upstream 13056 true Chr01: 42483873-42496928 Eucalyptus grandis
Eucgr.A02720 10.0kb upstream 10.0kb upstream 10000 false Chr01: 42486929-42496928 Eucalyptus grandis
Eucgr.A02720 10.0kb downstream 10.0kb downstream 13056 true Chr01: 42473873-42486928 Eucalyptus grandis
Eucgr.A02720 10.0kb downstream 10.0kb downstream 10000 false Chr01: 42473873-42483872 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068830 5270 Rosid View MSA
123749334 5271 Pentapetalae View MSA
122792381 5272 Eudicot View MSA
122041960 5273 Angiosperm View MSA
121348427 5274 Embryophyte View MSA
123380862 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.34761 0.0 8.70804    
cufflinks 4.12563 0.0 10.3963    
cufflinks 3.3512 0.0 8.70321    
cufflinks 1.54777 0.0 4.40301   Low
cufflinks 2.86062 0.0 7.64337    
cufflinks 9.46671 0.0 21.8833   High

0 Strain